BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 04-14-2014, 10:20 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,184
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default extract error bars from sparky S/N or deviation or both

extract error bars from sparky S/N or deviation or both

Dear NMR wiki community,

I have recorded 24 sequential 15N HSQC spectra, in an H/D exchange experiment and now, I am having problem with the concept of what to use for the error bars on each spectrum signal intensity? To be as fast as possible, I have recorded the primary HSQCs only with 2 scans, later 4 scans, later 8.. I see, there is S/N ( 7 3 5 1 6 2 11 2 3 4 2 2 4 1 6 0 0 2 0 1 1 2 0 1)* and scans (2 2 2 4 4 4 4 8 8 8 8 8 8 8 16 16 16 16 16 16 16 16 32 32) and deviation.
  • each experiment is separated by space
Probably, I have to correct the deviations manually if there is any but, how to combine S/N and number of scans to add error bars at each signal intensity?

I hope I am clear!

ThanksM.



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] Macro available that can determine the standard deviation of the spectral noise for a many similar 2D spectra
Macro available that can determine the standard deviation of the spectral noise for a many similar 2D spectra Hi ! I need a macro that can determine the standard deviation of the spectral noise for a manysimilar 2D spectra. I have 75 spectra obtained for an R1-rho experiment.Each spectra has an alteration for either of the varian parameter:deltadof2, dpwr2slock or ncyc. I use NMRPipe seriesTab to acquire the peak height for each spectrum.I use relax (http://nmr-relax.com) to perform the analysis.
nmrlearner News from other NMR forums 0 09-16-2013 05:07 PM
[NMRwiki tweet] nmrwiki: what is error 113 in @bruker #nmr software? http://qa.nmrwiki.org/question/251/error-113-lid-is-close
nmrwiki: what is error 113 in @bruker #nmr software? http://qa.nmrwiki.org/question/251/error-113-lid-is-close nmrwiki: what is error 113 in @bruker #nmr software? http://qa.nmrwiki.org/question/251/error-113-lid-is-close Source: NMRWiki tweets
nmrlearner Twitter NMR 0 04-15-2011 01:40 AM
[NMR tweet] Is it Possible to Extract Metabolic Pathway Information from In Vivo H Nuclear Magnet
Is it Possible to Extract Metabolic Pathway Information from In Vivo H Nuclear Magnetic Resonance Spectroscopy Data? - http://goo.gl/tPPb Published by abhishektiwari (Abhishek Tiwari) on 2010-10-17T12:00:12Z Source: Twitter
nmrlearner Twitter NMR 0 10-17-2010 12:00 PM
[NMR Sparky Yahoo group] Re: error reading post script file from sparky
Re: error reading post script file from sparky Mehul, I've encountered a similar problem when trying to read Sparky generated PostScript files in Inkscape. Here is the workaround I've used: 1. Use "ps2pdf" More...
nmrlearner News from other NMR forums 0 10-06-2010 02:23 PM
[NMR Sparky Yahoo group] error reading post script file from sparky
error reading post script file from sparky Hi Everyone, *** I am trying to print a post script file from sparky using the 'pt' accelerator followed by the save button. It is making a post script file More...
nmrlearner News from other NMR forums 0 10-06-2010 02:23 PM
[NMR paper] NMR 15N relaxation and structural studies reveal slow conformational exchange in bars
NMR 15N relaxation and structural studies reveal slow conformational exchange in barstar C40/82A. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR 15N relaxation and structural studies reveal slow conformational exchange in barstar C40/82A. J Mol Biol. 1997 May 2;268(2):494-511 Authors: Wong KB, Fersht AR, Freund SM Barstar an 89-residue protein consisting of four helices and a three-stranded parallel beta-sheet, is the intracellular inhibitor of the...
nmrlearner Journal club 0 08-22-2010 03:31 PM
[NMR paper] NMR 15N relaxation and structural studies reveal slow conformational exchange in bars
NMR 15N relaxation and structural studies reveal slow conformational exchange in barstar C40/82A. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR 15N relaxation and structural studies reveal slow conformational exchange in barstar C40/82A. J Mol Biol. 1997 May 2;268(2):494-511 Authors: Wong KB, Fersht AR, Freund SM Barstar an 89-residue protein consisting of four helices and a three-stranded parallel beta-sheet, is the intracellular inhibitor of the...
nmrlearner Journal club 0 08-22-2010 03:03 PM
[Question from NMRWiki Q&A forum] How to extract Bruker fid data - in topspin and xwinnmr - to ascii format?
How to extract Bruker fid data - in topspin and xwinnmr - to ascii format? Hi and thanks for answering my prev. questions! Decided to ask this one: How can I convert fid data (ser file) to plain text openable in programmes like Origin? Would really like to know how to do this in Topspin and XWinNMR. Thank you!!!
nmrlearner News from other NMR forums 0 08-22-2010 02:30 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 03:56 AM.


Map