BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 01-05-2011, 11:40 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,134
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default converting pdb to cyana library file

converting pdb to cyana library file

hello everyone,

i work on modified amino acids. i have cartesian coordinates for these residues from crystal structures as PDB . i would like to know, how to convert PDB to cyana residue library format.

if anybody wants to know further i can post the pdb coordinates.



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR Sparky Yahoo group] Re: cyana extensions
Re: cyana extensions Hi Eiso, Looking at the code for the ucsfdata program (ucsfdata.cc and ucsffile.cc) I see that all of the options that change the file header values operate on More...
nmrlearner News from other NMR forums 0 08-20-2011 04:50 AM
[Question from NMRWiki Q&A forum] Converting from 2 column data to Topspin fid
Converting from 2 column data to Topspin fid I am new to Topspin and would like to know if a 2 column dataset (containing time versus intensity) can be converted into an fid file that then can be processed using Topspin commands such as efp. Any guidance in this would be very welcome. Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 06-27-2011 04:30 AM
[NMRwiki tweet] nmrwiki: How to convert PDB to CYANA rlib file? http://qa.nmrwiki.org/question/214/
nmrwiki: How to convert PDB to CYANA rlib file? http://qa.nmrwiki.org/question/214/ nmrwiki: How to convert PDB to CYANA rlib file? http://qa.nmrwiki.org/question/214/ Source: NMRWiki tweets
nmrlearner Twitter NMR 0 01-05-2011 11:40 PM
[Question from NMRWiki Q&A forum] converting nmrpipe processed data (.ft3 files) to felix matrix
converting nmrpipe processed data (.ft3 files) to felix matrix I am trying to convert the .ft3 files into a felix matrix using the pipe2mat conversion filter in felix but it doesn't seem to work properly - it does generate a matrix but the size of the matrix is too small and Felix freezes if I try to open it. Does anyone have a script to do so? or maybe you got the felix filter to work? Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 12-07-2010 09:54 AM
[NMR paper] An AMBER/DYANA/MOLMOL phosphorylated amino acid library set and incorporation into NMR structure calculations.
An AMBER/DYANA/MOLMOL phosphorylated amino acid library set and incorporation into NMR structure calculations. Related Articles An AMBER/DYANA/MOLMOL phosphorylated amino acid library set and incorporation into NMR structure calculations. J Biomol NMR. 2005 Sep;33(1):15-24 Authors: Craft JW, Legge GB Protein structure determination using Nuclear Magnetic Resonance (NMR) requires the use of molecular dynamics programs that incorporate both NMR experimental and implicit atomic data. Atomic parameters for each amino acid type are encoded in...
nmrlearner Journal club 0 12-01-2010 06:56 PM
Aldrich library of NMR spectra
Aldrich library of NMR spectra 1st and 2nd editions More...
nmrlearner NMR bookmarks 0 09-06-2010 11:54 PM
BMRB library of Bruker pulse sequences
The following Bruker pulse sequences can be found on BMRB website. Shift correlation: Homonuclear Three-dimensional TOCSY-HSQC 3D experiment NOESY-HSQC 3D experiment Heteronuclear
nmrlearner NMR pulse sequences 0 03-26-2005 06:18 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:56 PM.


Map