BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Ask NMR questions! Earn NMR points Redeem NMR points Vote for NMR papers Twitter Ask to aggregate a site  Our Linkedin group
Go Back   BioNMR > NMR community > News from other NMR forums
What are the biggest differences in solving NMR structures of DNA or RNA vs. proteins? [Question from NMRWiki Q&A forum] What are the biggest differences in solving NMR structures of DNA or RNA vs. proteins?
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Reply
View First Unread View First Unread  
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 06-28-2016, 04:38 AM
nmrlearner's Avatar
Senior Member
  
Join Date: Jan 2005
Posts: 23,174
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default What are the biggest differences in solving NMR structures of DNA or RNA vs. proteins?
What are the biggest differences in solving NMR structures of DNA or RNA vs. proteins?

I've only solved NMR structure of globular proteins (actually in a complex with a short stretch of DNA), but never a structure of nucleic acid alone.

What are (are there?) the major differences in the approaches when working on a structure of nucleic acid - in terms of choice of the NMR technique, maybe specific parameters and structure simulation?

Are distance restraints alone sufficient to obtain structure of DNA or RNA?

Thank you in advance!



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote

Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] NMR-based metabolomics highlights differences in plasma metabolites in pigs exhibiting diet-induced differences in adiposity.
NMR-based metabolomics highlights differences in plasma metabolites in pigs exhibiting diet-induced differences in adiposity. NMR-based metabolomics highlights differences in plasma metabolites in pigs exhibiting diet-induced differences in adiposity. Eur J Nutr. 2015 May 22; Authors: Jégou M, Gondret F, Lalande-Martin J, Tea I, Baéza E, Louveau I Abstract 		nmrlearner Journal club 0 05-23-2015 10:08 AM
[Question from NMRWiki Q&A forum] Help solving a spectrum!
Help solving a spectrum! Can someone please help me solve an nmr problem? I've tried a lot but can't get it. Please post ur email and i'll send you the spectra. Thanks in advance Check if somebody has answered this question on NMRWiki QA forum 		nmrlearner News from other NMR forums 0 07-26-2013 09:32 PM
[NMR images] Solving protein structures by NMR
http://img.docstoccdn.com/thumb/orig/42605640.png www.docstoc.com 27/06/2013 2:11:12 PM GMT Solving protein structures by NMR More... 		nmrlearner NMR pictures 0 06-27-2013 02:10 PM
Intro to NMR Problem Solving
Intro to NMR Problem Solving http://i.ytimg.com/vi/HvkTMcqw11c/default.jpg Intro to NMR Problem Solving A video guide to NMR problems. See the chemtips blog for a full writeup. http://chemtips.wordpress.com/2012/10/23/on-nmr/ Step 1: Determine the unsaturation ... From:Chemtips Views:1721 http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif... 		nmrlearner NMR educational videos 0 03-31-2013 03:09 PM
solving a proton nmr problem at bryn mawr college
solving a proton nmr problem at bryn mawr college http://i.ytimg.com/vi/-Knphzp116s/default.jpg solving a proton nmr problem at bryn mawr college the solution of a typical nmr problem by nerz at bryn mawr college From:mnerzsto Views:5635 http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif 14ratings 		nmrlearner NMR educational videos 0 01-01-2012 06:35 PM
[NMR tweet] @SciTechWoman I work in MRI and NMR (nuclear magnetic resonance) biggest player is a
@SciTechWoman I work in MRI and NMR (nuclear magnetic resonance) biggest player is a company called Bruker and guess what? they're German Published by Get0nmylawn (Donovan ) on 2010-10-18T22:41:56Z Source: Twitter 		nmrlearner Twitter NMR 0 10-19-2010 12:03 AM
Some instruction about solving NMR spectra at Bryn Mawr College
Some instruction about solving NMR spectra at Bryn Mawr College http://i.ytimg.com/vi/Ju_2HZ5-q_U/default.jpg Some instruction about solving NMR spectra at Bryn Mawr College A simulated proton spectrum is solved using techniques covered in class From: mnerzsto Views: 622 http://gdata.youtube.com/static/images/icn_star_empty_11x11.gif http://gdata.youtube.com/static/images/icn_star_empty_11x11.gif http://gdata.youtube.com/static/images/icn_star_empty_11x11.gif http://gdata.youtube.com/static/images/icn_star_empty_11x11.gif... 		nmrlearner NMR educational videos 0 08-19-2010 02:20 AM


« Previous Thread | Next Thread »

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts
BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off

BioNMR RSS Feeds - FAQ - Members - Terms of Service - Privacy Statement - Site Map - Top


BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:52 AM.


Map