BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 01-18-2011, 02:44 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,175
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Free for 1 Year

Free for 1 Year

I said to myself: "What if I return to the original concept of the blog, that is to write reviews of existing NMR software"?
I remembered there was one I had never tried. It's called NPNMR (where NP stays for: "Natural Products") and the web site has been in existence for a number of years, though I only heard about it from Google. The NMR wiki ignores it. I remembered there was a freeware version; I wanted to try it. The installation was successful. License was more problematic. The free license is not forever. It only lasts one year, starting from January 1, 2010. In practice it has already expired. "If you use the software on a regular basis, you should purchase a regular (commercial) license." I am waiting day after day, now I am a little tired of waiting and here is the review (without having tried the program!).
From the little I have read of the manual, it could be a fine product, with all the functions that today are considered the bare minimum. The author copied the right ideas from the right sources. The final result looks personal and tasteful. Some interface choices are arguable, like the multitude of different tools to perform correlated actions. For example, there are three integration modes and they are all necessary: the "integration" mode, the "remove" mode and the "edit" mode. Easy to learn but awkward for repetitive work.
The commercial price is reasonable. 500 euro for a professional program was a convenient price 10 years ago. I appreciate this kind of commercial policy: rounded figures that never change, the same price for everybody, no special deals, no promotions. Maybe the recent trend of the market made you think that a software can cost an order of magnitude less, but this is wrong. The software industry is not sustainable at low prices.
NPNMR is a Java program, with the limitations and the advantages of the language.
My impression about the NPNMR story is that the market is saturated. It's not enough to have a good product. It's not enough if the product is also free. A lot of hard work is required to make it popular. And NPNMR is not popular yet (otherwise I would have already found a license valid for 2011). A free product that requires a lot of hard work is an absurdity that can't last. We have already seen what happened in the past with other programs: Mestre-C is the most famous example, with NMRPipe representing a different illustration of the same basic concept.


Source: NMR Software blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR900 blog] 2011 International Year of Chemistry
2011 International Year of Chemistry January 2011 marks the beginning of the International Year of Chemistry. The Chemical Institute of Canada (CIC) is leading the Canadian activities which will be devoted to the celebration of chemical sciences and will aim to reach over 500,000 Canadians. We encourage all CIC members to get involved throughout the year. CIC has been active in planning events for 2011, some of which include: - Global Water Experiment, connecting countries around the world to solve current water issues; - YouTube Video Contest, giving high school students a chance...
nmrlearner News from NMR blogs 0 01-09-2011 12:33 AM
[NMR900 blog] IYC 2011 International Year of Chemistry
IYC 2011 International Year of Chemistry 2011 is the International Year of Chemistry (IYC). IYC is a global celebration devoted to chemistry and its role in the well-being of society. Through events at the local, provincial, national, and international levels, organizers hope to spark enthusiasm for this central science in all people of all ages. The Chemical Institute of Canada is proud to be leading the Canadian initiative and all CIC members are encouraged to join in the celebrations in 2011 by holding events of their own or participating in the many events planned throughout the...
nmrlearner News from NMR blogs 0 10-08-2010 02:35 AM
3 year postdoc position available
3 YEAR POSTDOC POSITION AVAILABLE 3 YEAR POSTDOC POSITION AVAILABLE http://www.nmrstr.ugent.be The NMR and Structure Analysis unit of the Department of Organic Chemistry of Gent University (Belgium) is involved in research activities in the (bio)chemical and material sciences using NMR spectroscopy as the main investigative tool. For this purpose, it has available a range of fully equipped Bruker NMR spectrometers, including Avance 300 and 500 MHz spectrometers, and an AVANCE–II 700 MHz instrument, housed within the unit and part of the Interuniversitary NMR Facility, jointly operated...
nmrlearner Job marketplace 0 09-27-2010 08:59 PM
[Stan NMR blog] Happy New Year 2009
Happy New Year 2009 A reflection on the perspectives of magnetic resonance in 2009 More...
nmrlearner News from NMR blogs 0 08-21-2010 05:42 PM
one-year renewable postdoctoral position
one-year renewable postdoctoral position A one-year renewable postdoctoral position is available in the laboratory of Magnetic Resonances (LRM) at CEA/INAC in Grenoble (France) under the supervision of Dr. M. Bardet. The candidate will be involved in a joint project with the Advance Battery Laboratory (LBA) of CEA/LITEN in Grenoble which aims at improving the understanding of Li-ion battery properties (calendar life, cycle life, shelf life, etc.) through the use of appropriate solid-state NMR experiments.
nmrlearner Job marketplace 0 08-21-2010 05:17 AM
Year 2: NMR Spectroscopy
Year 2: NMR Spectroscopy More...
nmrlearner NMR bookmarks 0 08-19-2010 02:34 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 07:33 AM.


Map