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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 05-25-2011, 10:14 AM
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Default VirtualBox

VirtualBox

This piece of software is worth trying. It is not an application; it does nothing by itself. All it does is to create a virtual computer. Instead of buying a computer, you start a virtual machine. Think at the enviromental impact. You can even start many virtual machines simultaneously.
In my case, I own a Mac but have found some interesting games that require Windows. I have already tried BootCamp, that is perfect, yet I also liked the possibility of keeping my game open while I was working. It made no sense to buy a commercial software to run a free game, but Virtual Box is different, because it is free.
Advantages:
  1. Is free
  2. Is backed by a big company like Oracle
  3. Easy to install
    Many things work without the need of configuring them, for example when I install an operating system on a virtual machine, it is already connected to the internet
Limitations:
  1. I have found a program (Chessmaster) that does not run on the virtual machine. Maybe you will find other programs that won't run.
  2. Though the manual says it is possible to share a folder between the host system and the guest system I have not been able of sharing anything.

If I really need to exchange files between my real computer and the virtual machine, I send emails to myself. For this reason, I use the virtual box only for playing. Using it for real work is not practical, and probably it's not even safe. Anyway, for the average Mac user, there is no reason to use Windows for work. Maybe the the contrary is true, that is Windows users might need to install Mac OS on their machines. This is something I haven't tried but should be possible.
Oracle is actively working on the VirtualBox and it may become a planetary success in the future.


Source: NMR Software blog
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