BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-21-2010, 06:29 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,134
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Open Source NMR freeware

Open Source NMR freeware

Most of the readers arrive here using Google, without knowing me and my blog. Usually they get very angry because they arrive... on the trapping post I wrote 3 years ago! I want to do something to keep them glad...
So you want "open source" stuff? Do you know what it really means? Are you ready to compile, test, debug it and add a graphic interface to it?
Just because you asked for it, here is a list of available projects. If you know other links, add them into a comment.

CCPN
NPK
matNMR
ProSpectND
Connjur
Newton-NMR
nmrproc
DOSY Toolbox
list of 30+ projects


More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
A source of RPMs for several NMR-related programs
BioLinux-BR Project offers RPM packages for such popular programs as MolMol, PROCHECK and XPLOR-NIH. Project description from its website: BioLinux-BR is a project directed to the scientific community. Our intention is to create a Linux distribution for people with little familiarity with the installation of the operational system and mainly for people that do not know how they must proceed to unpack a program, compile and install it correctly. For these reasons, we are giving our contribution, developing a Linux system that aims to be easy to use and still offering packages that...
nmrlearner General 3 12-18-2014 09:29 AM
[NMR tweet] CERN www.google.ca/#sclient=psy&hl=en&source=hp&q=%22multiple+nuclear +magnetic+resonance%22&aq=f&aqi=&aql=&oq=&pbx=1&fp =4b49d733da93cd58
CERN www.google.ca/#sclient=psy&hl=en&source=hp&q=%22multiple+nuclear+magnetic+resonance%22&aq=f&aqi=&aql=&oq=&pbx=1&fp=4b49d733da93cd58 Published by fjdslkjfsdklfj (fjdslkjf sdklfj) on 2011-05-05T15:43:25Z Source: Twitter
nmrlearner Twitter NMR 0 05-05-2011 03:43 PM
[NMR tweet] CERN www.google.ca/#sclient=psy&hl=en&source=hp&q=%22quantum+nuclear+ magnetic+resonance%22&aq=f&aqi=g-b1&aql=&oq=&pbx=1&fp=4b49d733da93cd58
CERN www.google.ca/#sclient=psy&hl=en&source=hp&q=%22quantum+nuclear+magnetic+resonance%22&aq=f&aqi=g-b1&aql=&oq=&pbx=1&fp=4b49d733da93cd58 Published by fjdslkjfsdklfj (fjdslkjf sdklfj) on 2011-05-05T15:41:41Z Source: Twitter
nmrlearner Twitter NMR 0 05-05-2011 03:43 PM
[NMR tweet] Accumulation of Spectra 1.1 (Freeware): Analyze nuclear magnetic resonance signals with this tool. http://bit.ly/eRGiZq
Accumulation of Spectra 1.1 (Freeware): Analyze nuclear magnetic resonance signals with this tool. http://bit.ly/eRGiZq Published by AlbertRio (Rio Alberto) on 2011-03-23T03:36:55Z Source: Twitter
nmrlearner Twitter NMR 0 03-23-2011 03:40 AM
CONNJUR spectrum translator: an open source application for reformatting NMR spectral data
CONNJUR spectrum translator: an open source application for reformatting NMR spectral data Abstract NMR spectroscopists are hindered by the lack of standardization for spectral data among the file formats for various NMR data processing tools. This lack of standardization is cumbersome as researchers must perform their own file conversion in order to switch between processing tools and also restricts the combination of tools employed if no conversion option is available. The CONNJUR Spectrum Translator introduces a new, extensible architecture for spectrum translation and introduces two...
nmrlearner Journal club 0 03-18-2011 06:51 PM
CONNJUR - open source integration environment for biomolecular NMR data analysis
CONNJUR Project website The CONNJUR Project is developing an open source integration environment for biomolecular NMR data analysis. CONNJUR software is a workflow generator, based on legacy NMR analysis applications, that is being developed as Open Source Software -- it is perpetually free for anyone to use, modify and distribute. CONNJUR is developed by a community of NMR spectroscopists and scientific programmers who aim to create and maintain NMR analysis tools bounded by the goals of excellent end-product, free of charge, open source software using the...
markber NMR software 0 11-01-2010 07:45 PM
[NMR Geek blog] Fluorescence: A source of noise in NMR?
Fluorescence: A source of noise in NMR? The other day I was reading a book “Experimental Pulse NMR: A Nuts and Bolt Approach” by Eiichi Fukushima and Stephen B W Roeder and I was encountered with a sentence which says,”Fluorescent lights generate noise which can be picked up in the spectrometer.” (para 1, page 13). I wonder if they are talking about Full story can be found on the NMR geek blog
nmrlearner News from NMR blogs 0 08-22-2010 01:41 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 12:28 PM.


Map