BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 06-21-2018, 10:11 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,178
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Glycine as a 13C CPMAS Setup Sample

Glycine as a 13C CPMAS Setup Sample

Glycine is an excellent setup compound for 13C CPMAS NMR measurements. Its utility in this regard has been described in detail.1,2 It can easily be observed in one scan and has reasonably short 1H T1's, allowing it to be used for 1H 90° pulse calibration and to setup the Hartmann Hahn matching condition. The width of the methylene carbon signal can be conveniently used to evaluate the proton decoupling efficiency. The width and shape of the carbonyl signal are very sensitive to the angle at which the sample is spun and can be used to set the magic angle with a reasonably high degree of precision. In addition the carbonyl resonance is sharp and can be used as a secondary standard for chemical shift calibration. If used as a secondary chemical shift standard, one must be aware that glycine has three polymorphic forms, each with different carbonyl chemical shifts. The polymorphic form is not generally displayed on the reagent bottle and different suppliers may provide different polymorphs or mixtures of polymorphs. It is therefore important to know which polymorph is being used to calibrate the chemical shift scale. The ? and ? polymorphs are the most common and stable, while the ? polymorph is less stable and easily converted over time to the ? polymorph. Furthermore, the ? polymorph has a very short 1H T1? at room temperature and therefore difficult to observe with typical millisecond CP contact times. The ? polymorph can be converted to the ? polymorph at 165°C. The chemical shifts for the carbonyl resonances for the ? and ? polymorphs are 176.5 ppm and 174.6 ppm, respectively.1 The chemical shift of the ? polymorph is between that of the ? and ? polymorphs however, it is not usually observed. The figure below shows the carbonyl region of the 13C CPMAS spectrum of three samples of glycine: pure ?, pure ? and a mixture of the ? and ? polymorphs.
If a single carbonyl resonance is observed for a sample of glycine using typical millisecond CP contact times, one can determine if it is the ? or ? polymorph by measuring its chemical shift with respect to another chemical shift standard. Alternatively, since the 1H T1? characteristics for the ? and ? polymorphs are quite different from one another at room temperature, the authors of reference 1 report that a CPMAS spectrum collected with a 20 msec contact time will show almost no signal for the carbonyl carbon of the ? polymorph. The carbonyl signal of the ? polymorph, on the other hand, will be only slightly attenuated compared to a CPMAS spectrum measured with a 1 msec contact time.

1. M.J. Potrzebowski, P. Tekely, Y. Dusausoy. Solid State Nuclear Magnetic Resonance. 11, 253 (1998).
2. R. E. Taylor. Concepts in Magnetic Resonance. 22A, 1 (2004).


Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] NMR study of mutations of glycine-52 of the catalytic domain of diphtheria toxin.
NMR study of mutations of glycine-52 of the catalytic domain of diphtheria toxin. NMR study of mutations of glycine-52 of the catalytic domain of diphtheria toxin. J Pharm Biomed Anal. 2017 Dec 02;150:72-79 Authors: Sauvé S, Gingras G, Aubin Y Abstract Cross-reacting-material 197 (CRM197) is a naturally occurring non-toxic mutant of diphtheria toxin (DT) that is one of the few carrier protein used in the manufacture of polysaccharide vaccines targeting bacterial pathogens such as Neisseria meningitidis, Streptococcus...
nmrlearner Journal club 0 12-08-2017 02:25 PM
Solid Effect DNP in a Rapid-melt setup #DNPNMR
From The DNP-NMR Blog: Solid Effect DNP in a Rapid-melt setup #DNPNMR van Bentum, P.J.M., et al., Solid Effect DNP in a Rapid-melt setup. J. Magn. Reson., 2016. 263: p. 126-135. http://dx.doi.org/10.1016/j.jmr.2015.12.023
nmrlearner News from NMR blogs 0 07-04-2016 11:25 PM
[U. of Ottawa NMR Facility Blog] Mixture Resolution in 13C CPMAS NMR
Mixture Resolution in 13C CPMAS NMR The recycle delay necessary to get the highest signal-to-noise ratio in a multi-scan 13C CPMAS NMR spectrum depends on the relaxation properties of the protons in the sample. The protons in pure solid samples normally belong to a single homogeneous dipolar coupled network. As a result, all of the protons in the coupled network have a common T1 relaxation time. One would expect the same behavior for a mixture of compounds only if the components were mixed at the molecular level. If the compounds are not mixed at the molecular level, the sample...
nmrlearner News from NMR blogs 0 03-27-2015 07:43 AM
[Question from NMRWiki Q&A forum] 195Pt experiment setup help needed
195Pt experiment setup help needed We just bought a new console (with Topspin 3.2)for our Bruker 400 and noticed that not all experiments that we previously used to run are setup on the new version. For instance, 195Pt experiment is not working. The message that appeared when we tried it was: "Cannot perform getprosol. The following files are not found. Observe pulses for 195Pt. DE and Trim pulses for 195Pt". Could any one help with the step-by-step procedure for setting up this experiment? Perhaps the probe file is not populated with pulses for 195Pt. We would greatly appreciate...
nmrlearner News from other NMR forums 0 03-19-2014 10:43 PM
[Question from NMRWiki Q&A forum] 2DNOESY with N15 C13 Labelled sample or Unlabelled sample
2DNOESY with N15 C13 Labelled sample or Unlabelled sample Dear Friends, I am in process of doing structure calculation of dimeric protein 22kD by using ARIA2.2 . Can I acquire 2DNOESY spectrum for my protein. Will it provide useful information for structure calculation? And whether I should acquire 2DNOESY with N15 C13 Labelled sample or Unlabelled sample . Which sample would be appropriate for this kind of experiment on VNMRJ 700 with biopack ? Thanks & Regards Srinivas Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 02-06-2012 03:54 PM
[Question from NMRWiki Q&A forum] 1,n-ADEQUATE setup
1,n-ADEQUATE setup I need to measure the 4-bond coupling into a group of unassigned quaternary carbons.I would like to use the 1,n-ADEQUATE but it is commonly displayed as a DQ format which is not comparable to the standard 2D axis. I read about a refocused version of the 1,1-ADEQUATE. This refocusing makes it possible to directly compare the spectra of traditional non-DQ formats so I was wondering if the same refocusing period could be used in the 1,n experiment? If not, how do you optimize the indirect DQ formated axis (in Bruker SW and O2P) of the 1,n-ADEQUATE experiment if you...
nmrlearner News from other NMR forums 0 07-29-2011 11:48 PM
[KPWU blog] Ramachandran space of Glycine and Proline
Ramachandran space of Glycine and Proline The following two plots are made according to the statistical values provided by the Richardson group. I download the KINEMAGE format of Glycine and Proline. Inside the two files, core and allowed regions are defined and can be extracted to make my own Ramachandran plot. The defined core and allowed regions are also shown in http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=397&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 06-18-2011 03:04 AM
[NMR paper] NMR structural characterization of oligo-N-substituted glycine lead compounds from a
NMR structural characterization of oligo-N-substituted glycine lead compounds from a combinatorial library. Related Articles NMR structural characterization of oligo-N-substituted glycine lead compounds from a combinatorial library. Mol Divers. 1997;3(1):1-15 Authors: Bradley EK, Kerr JM, Richter LS, Figliozzi GM, Goff DA, Zuckermann RN, Spellmeyer DC, Blaney JM Synthesis and screening of combinatorial libraries for pharmaceutical lead discovery is a rapidly expanding field. Oligo-N-substituted glycines (NSGs) were one of the earliest sources...
nmrlearner Journal club 0 08-22-2010 03:31 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:56 AM.


Map