BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-21-2010, 08:15 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,178
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default E.COSY and the Relative Signs of Coupling Constants

E.COSY and the Relative Signs of Coupling Constants

Spin-spin coupling constants can have values greater than or less than zero. The absolute sign of the coupling constants cannot be discerned from the simple examination of a 1H NMR spectrum. The E.COSY1 (Exclusive COrrelation SpectroscopY) technique is one method which can be used to determine the relative signs of coupling constants. E.COSY is a phase sensitive COSY variant which produces off-diagonal signals showing only the active coupling (i.e. the coupling directly responsible for the cross-peak) as 2x2 antiphase square tetrads displaced in both the F2 and F1 domains by an amount equal to the passive coupling constants (i.e. the couplings not directly responsible for the cross peak). The slope of a line drawn through the cross-peaks is used to determine the relative signs of the passive coupling constants. The sign of the slope depends on whether the signs of the passive couplings are the same or whether they differ. The figure below shows the gradient E.COSY spectrum2 (using the Bruker pulse program,"ecosygpph" ) for the ABX three-spin system in phenylalanine.The cross-peaks highlighted in yellow in the top panel of the figure are expanded in the bottom panel. Black contours are positive and red contours are negative. The panel on the bottom left shows the cross-peaks for AX and BX. In the case of the AX cross-peak, the line drawn through the cross peak has a positive slope indicating that the passive couplings JAB and JBX are of opposite sign. The line drawn through the BX cross peak also has a positive slope indicating that the passive couplings JAB and JAX are of opposite sign. From this we can deduce that JAX and JBX are of the same sign. The panel on the bottom right shows the cross-peak for AB. In this case, the line drawn through the cross peak has a negative slope confirming that the passive couplings JAX and JBX are of the same sign. In conclusion, the geminal and vicinal coupling constants are of opposite sign.

1. C. Griesinger, O.W. Sorensen & R.R. Ernst, J. Magn. Reson. 75, ; 474 - 492 (1987).

2. The ecosygpph pulse program produces spectra similar to those described in reference 1 as "complimentary" E.COSY spectra. The slope of the lines through the cross peaks in "complementary" E.COSY spectra are of opposite sign to those obtained from the E.COSY spectra described in reference 1.



Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR tweet] Chemical Shifts and Coupling Constants for 0-17: Nuclear Magnetic Resonance/Nmr; Condensed Matter (Landolt-Barn... http://amzn.to/jTJCJn
Chemical Shifts and Coupling Constants for 0-17: Nuclear Magnetic Resonance/Nmr; Condensed Matter (Landolt-Barn... http://amzn.to/jTJCJn Published by Ozelldfv (Ozell Kaminsky) on 2011-05-22T13:24:53Z Source: Twitter
nmrlearner Twitter NMR 0 05-22-2011 02:00 PM
[NMR tweet] Chemical Shifts and Coupling Constants for 0-17: Nuclear Magnetic Resonance/Nmr; Condensed Matter (Landolt-Barn... http://amzn.to/jTJCJn
Chemical Shifts and Coupling Constants for 0-17: Nuclear Magnetic Resonance/Nmr; Condensed Matter (Landolt-Barn... http://amzn.to/jTJCJn Published by Margarettuqrk (Margarett Macchio) on 2011-05-18T12:53:19Z Source: Twitter
nmrlearner Twitter NMR 0 05-18-2011 01:50 PM
[NMR tweet] Chemical Shifts and Coupling Constants for 0-17: Nuclear Magnetic Resonance/Nmr; Condensed Matter (Landolt-Barn... http://amzn.to/iq2EmS
Chemical Shifts and Coupling Constants for 0-17: Nuclear Magnetic Resonance/Nmr; Condensed Matter (Landolt-Barn... http://amzn.to/iq2EmS Published by Philliskz11 (Phillis Martucci) on 2011-05-01T00:06:19Z Source: Twitter
nmrlearner Twitter NMR 0 05-01-2011 12:07 AM
[NMRwiki tweet] nmrwiki: How is peak intensity related to J coupling in COSY? #nmrhttp://qa.nmrwiki.o
nmrwiki: How is peak intensity related to J coupling in COSY? #nmrhttp://qa.nmrwiki.org/question/197/ nmrwiki: How is peak intensity related to J coupling in COSY? #nmrhttp://qa.nmrwiki.org/question/197/ Source: NMRWiki tweets
nmrlearner Twitter NMR 0 11-18-2010 06:16 PM
Conformational dependence of 13C shielding and coupling constants for methionine
Abstract Methionine residues fulfill a broad range of roles in protein function related to conformational plasticity, ligand binding, and sensing/mediating the effects of oxidative stress. A high degree of internal mobility, intrinsic detection sensitivity of the methyl group, and low copy number have made methionine labeling a popular approach for NMR investigation of selectively labeled protein macromolecules. However, selective labeling approaches are subject to more limited information content. In order to optimize the information available from such studies, we have performed DFT...
nmrlearner Journal club 0 08-25-2010 03:51 PM
[NMR paper] The impact of direct refinement against three-bond HN-C alpha H coupling constants on
The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR. Related Articles The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR. J Magn Reson B. 1994 May;104(1):99-103 Authors: Garrett DS, Kuszewski J, Hancock TJ, Lodi PJ, Vuister GW, Gronenborn AM, Clore GM
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] The impact of direct refinement against three-bond HN-C alpha H coupling constants on
The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR. Related Articles The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR. J Magn Reson B. 1994 May;104(1):99-103 Authors: Garrett DS, Kuszewski J, Hancock TJ, Lodi PJ, Vuister GW, Gronenborn AM, Clore GM
nmrlearner Journal club 0 08-22-2010 03:33 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:13 AM.


Map