BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 01-06-2018, 11:17 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 18,201
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default We FRET so You Donít Have To: New Models ofthe Lipoprotein Lipase Dimer

We FRET so You Donít Have To: New Models ofthe Lipoprotein Lipase Dimer



Biochemistry
DOI: 10.1021/acs.biochem.7b01009



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Identification of the Dimer Exchange Interface ofthe Bacterial DNA Damage Response Protein UmuD
Identification of the Dimer Exchange Interface ofthe Bacterial DNA Damage Response Protein UmuD http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00560/20170829/images/medium/bi-2017-005606_0007.gif Biochemistry DOI: 10.1021/acs.biochem.7b00560 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/dMQp1snzZ6k More...
nmrlearner Journal club 0 08-30-2017 10:52 AM
Biochemical Analysis of the Lipoprotein Lipase TruncationVariant, LPLS447X, Reveals Increased Lipoprotein Uptake
Biochemical Analysis of the Lipoprotein Lipase TruncationVariant, LPLS447X, Reveals Increased Lipoprotein Uptake http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00945/20170109/images/medium/bi-2016-00945s_0007.gif Biochemistry DOI: 10.1021/acs.biochem.6b00945 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/bYK0UC4JExQ More...
nmrlearner Journal club 0 01-10-2017 08:28 AM
[NMR paper] Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS.
Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS. Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS. Proc Natl Acad Sci U S A. 2016 Aug 26; Authors: Aznauryan M, Delgado L, Soranno A, Nettels D, Huang JR, Labhardt AM, Grzesiek S, Schuler B Abstract The properties of unfolded proteins are essential both for the mechanisms of protein folding and for the function of the large...
nmrlearner Journal club 0 08-28-2016 11:03 AM
Replacing Arginine 33 for Alanine in the HemophoreHasA from Pseudomonas aeruginosa Causes Closure ofthe H32 Loop in the Apo-Protein
Replacing Arginine 33 for Alanine in the HemophoreHasA from Pseudomonas aeruginosa Causes Closure ofthe H32 Loop in the Apo-Protein http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00239/20160427/images/medium/bi-2016-00239n_0010.gif Biochemistry DOI: 10.1021/acs.biochem.6b00239 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/qhl6hhT-JxM More...
nmrlearner Journal club 0 04-29-2016 02:48 AM
[NMR paper] Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data.
Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.plosone.org-images-pone_120x30.png Related Articles Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data. PLoS One. 2015;10(8):e0135455 Authors: Choudhury AR, Sikorska E, van den Boom J, Bayer P, Popenda ?, Szutkowski K, Jurga S, Bonomi M, Sali A, Zhukov I, Passamonti S, Novi? M Abstract We present a 3D model of the four...
nmrlearner Journal club 0 08-22-2015 11:20 AM
[NMR paper] A systematic approach to obtain validated partial least square models for predicting lipoprotein subclasses from serum NMR spectra.
A systematic approach to obtain validated partial least square models for predicting lipoprotein subclasses from serum NMR spectra. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles A systematic approach to obtain validated partial least square models for predicting lipoprotein subclasses from serum NMR spectra. Anal Chem. 2014 Jan 7;86(1):543-50 Authors: Mihaleva VV, van Schalkwijk DB, de Graaf AA, van Duynhoven J, van Dorsten FA, Vervoort J, Smilde A, Westerhuis JA,...
nmrlearner Journal club 0 07-16-2014 10:46 AM
[NMR paper] Production of stable isotope labelled lipase Lip2 from Yarrowia lipolytica for NMR: investigation of several expression systems.
Production of stable isotope labelled lipase Lip2 from Yarrowia lipolytica for NMR: investigation of several expression systems. Production of stable isotope labelled lipase Lip2 from Yarrowia lipolytica for NMR: investigation of several expression systems. Protein Expr Purif. 2014 May 20; Authors: Nars G, Saurel O, Bordes F, Saves I, Remaud-Simťon M, Andrť I, Milon A, Marty A Abstract Extracellular lipase Lip2 from Yarrowia lipolytica is a promising biocatalyst with unusual structural features, as indicated by x-ray...
nmrlearner Journal club 0 05-27-2014 10:18 AM
FRET Pursues Affordable, Robust, User-Friendly Instruments - Photonics.com
<img alt="" height="1" width="1" /> FRET Pursues Affordable, Robust, User-Friendly Instruments Photonics.com ... FRET-based solution structures for large and flexible proteins and their complexes, something that is quite challenging to do using standard structural biology techniques such as x-ray crystallography and NMR nuclear magnetic resonance ... FRET Pursues Affordable, Robust, User-Friendly Instruments - Photonics.com More...
nmrlearner Online News 0 04-10-2014 12:28 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2018, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:44 AM.


Map