Use of optimized 1D TOCSY NMR for improved quantitation and metabolomic analysis of biofluids
 

Use of optimized 1D TOCSY NMR for improved quantitation and metabolomic analysis of biofluids


Abstract One dimensional selective TOCSY experiments have been shown to be advantageous in providing improved data inputs for principle component analysis (PCA) (Sandusky and Raftery 2005a, b). Better subpopulation cluster resolution in the observed scores plots results from the ability to isolate metabolite signals of interest via the TOCSY based filtering approach. This report reexamines the quantitative aspects of this approach, first by optimizing the 1D TOCSY experiment as it relates to the measurement of biofluid constituent concentrations, and second by comparing the integration of 1D TOCSY read peaks to the bucket integration of 1D proton NMR spectra in terms of precision and accuracy. This comparison indicates that, because of the extensive peak overlap that occurs in the 1D proton NMR spectra of biofluid samples, bucket integrals are often far less accurate as measures of individual constituent concentrations than 1D TOCSY read peaks. Even spectral fitting approaches have proven difficult in the analysis of significantly overlapped spectral regions. Measurements of endogenous taurine made over a sample population of human urine demonstrates that, due to background signals from other constituents, bucket integrals of 1D proton spectra routinely overestimate the taurine concentrations and distort its variation over the sample population. As a result, PCA calculations performed using data matrices incorporating 1D TOCSY determined taurine concentrations produce better scores plot subpopulation cluster resolution.

• Content Type Journal Article
• Pages 1-10
• DOI 10.1007/s10858-011-9483-7
• Authors
  • Peter Sandusky, Department of Chemistry, Eckerd College, St. Petersburg, FL 33711, USA
  • Emmanuel Appiah-Amponsah, Department of Chemistry, Purdue University, West Lafayette, IN 47907, USA
  • Daniel Raftery, Department of Chemistry, Purdue University, West Lafayette, IN 47907, USA

• • Journal Journal of Biomolecular NMR
  • Online ISSN 1573-5001
  • Print ISSN 0925-2738

Source: Journal of Biomolecular NMR