BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 04-19-2018, 01:52 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,184
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Solution NMR Structure and Backbone Dynamics of Recombinant Bee Venom Melittin.

Solution NMR Structure and Backbone Dynamics of Recombinant Bee Venom Melittin.

Related Articles Solution NMR Structure and Backbone Dynamics of Recombinant Bee Venom Melittin.

Biochemistry. 2018 Apr 18;:

Authors: Ramirez L, Shekhtman A, Pande J

Abstract
In recent years there has been a resurgence of interest in melittin and its variants as their therapeutic potential has become increasingly evident. Melittin is a 26-residue peptide and a toxic component of honey bee venom. The versatility of melittin in interacting with various biological substrates, such as membranes, glycosaminoglycans and a variety of proteins has inspired a slew of studies to understand the structural basis of such interactions. However, these studies have largely focused on melittin solutions at high concentrations (> 1mM), even though melittin is generally effective at lower, (micromolar) concentrations. Here we present high-resolution NMR studies in the lower concentration regime using a novel method to produce isotope labeled (15N, 13C) recombinant melittin. We provide residue-specific structural characterization of melittin in dilute aqueous solution and in TFE-water mixtures, which mimic melittin structure-function and interactions in aqueous, and membrane-like environments respectively. We find that the cis-trans isomerization of Pro14 is key to changes in the secondary structure of melittin. Thus, this study provides residue-specific structural information on melittin in the free-state and in a model of the substrate-bound state. These results, taken together with published work from other labs, reveal the peptide's structural versatility which resembles that of intrinsically disordered proteins and peptides.


PMID: 29668274 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Solution NMR structures of oxidized and reduced Ehrlichia chaffeensis thioredoxin: NMR-invisible structure owing to backbone dynamics.
Solution NMR structures of oxidized and reduced Ehrlichia chaffeensis thioredoxin: NMR-invisible structure owing to backbone dynamics. Related Articles Solution NMR structures of oxidized and reduced Ehrlichia chaffeensis thioredoxin: NMR-invisible structure owing to backbone dynamics. Acta Crystallogr F Struct Biol Commun. 2018 Jan 01;74(Pt 1):46-56 Authors: Buchko GW, Hewitt SN, Van Voorhis WC, Myler PJ Abstract Thioredoxins are small ubiquitous proteins that participate in a diverse variety of redox reactions via the...
nmrlearner Journal club 0 01-27-2018 04:02 PM
Solution NMR Structure and Backbone Dynamics of PartiallyDisordered Arabidopsis thaliana Phloem Protein 16-1,a Putative mRNA Transporter
Solution NMR Structure and Backbone Dynamics of PartiallyDisordered Arabidopsis thaliana Phloem Protein 16-1,a Putative mRNA Transporter http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b01071/20180125/images/medium/bi-2017-01071p_0010.gif Biochemistry DOI: 10.1021/acs.biochem.7b01071 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/8sgEPJHqfXA More...
nmrlearner Journal club 0 01-27-2018 12:19 AM
[NMR paper] Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, A Putative mRNA Transporter.
Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, A Putative mRNA Transporter. Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, A Putative mRNA Transporter. Biochemistry. 2018 Jan 10;: Authors: Sashi P, Singarapu KK, Bhuyan AK Abstract Although RNA-binding proteins in plant phloem are believed to carry out long-distance systemic transport of RNA in the phloem conduit, the structure of none of them is...
nmrlearner Journal club 0 01-11-2018 04:07 PM
Solution NMR Structure,Backbone Dynamics, and Heme-BindingProperties of a Novel Cytochrome c Maturation ProteinCcmE from Desulfovibrio vulgaris
Solution NMR Structure,Backbone Dynamics, and Heme-BindingProperties of a Novel Cytochrome c Maturation ProteinCcmE from Desulfovibrio vulgaris http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi300457b/aop/images/medium/bi-2012-00457b_0002.gif Biochemistry DOI: 10.1021/bi300457b http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/NVB5M2Es_Us More...
nmrlearner Journal club 0 04-25-2012 05:25 AM
[NMR paper] Solution NMR structure and backbone dynamics of the PsaE subunit of photosystem I fro
Solution NMR structure and backbone dynamics of the PsaE subunit of photosystem I from Synechocystis sp. PCC 6803. Related Articles Solution NMR structure and backbone dynamics of the PsaE subunit of photosystem I from Synechocystis sp. PCC 6803. Biochemistry. 2002 Nov 26;41(47):13902-14 Authors: Barth P, Savarin P, Gilquin B, Lagoutte B, Ochsenbein F PsaE is a small peripheral subunit of photosystem I (PSI) that is very accessible to the surrounding medium. It plays an essential role in optimizing the interactions with the soluble electron...
nmrlearner Journal club 0 11-24-2010 08:58 PM
[NMR paper] Refined solution structure and backbone dynamics of 15N-labeled C12A-p8MTCP1 studied
Refined solution structure and backbone dynamics of 15N-labeled C12A-p8MTCP1 studied by NMR relaxation. Related Articles Refined solution structure and backbone dynamics of 15N-labeled C12A-p8MTCP1 studied by NMR relaxation. J Biomol NMR. 1999 Dec;15(4):271-88 Authors: Barthe P, Chiche L, Declerck N, Delsuc MA, Lefèvre JF, Malliavin T, Mispelter J, Stern MH, Lhoste JM, Roumestand C MTCP1 (for Mature-T-Cell Proliferation) was the first gene unequivocally identified in the group of uncommon leukemias with a mature phenotype. The...
nmrlearner Journal club 0 11-18-2010 08:31 PM
[NMR paper] Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) f
Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) from Escherichia coli: evidence for conformational dynamics in the single-stranded RNA-binding site. Related Articles Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) from Escherichia coli: evidence for conformational dynamics in the single-stranded RNA-binding site. Biochemistry. 1998 Aug 4;37(31):10881-96 Authors: Feng W, Tejero R, Zimmerman DE, Inouye M, Montelione GT The major cold-shock protein (CspA) from Escherichia...
nmrlearner Journal club 0 11-17-2010 11:15 PM
[NMR paper] Solution structure and backbone dynamics of recombinant Cucurbita maxima trypsin inhi
Solution structure and backbone dynamics of recombinant Cucurbita maxima trypsin inhibitor-V determined by NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Solution structure and backbone dynamics of recombinant Cucurbita maxima trypsin inhibitor-V determined by NMR spectroscopy. Biochemistry. 1996 Feb 6;35(5):1516-24 Authors: Liu J, Prakash O, Cai M, Gong Y, Huang Y, Wen L, Wen JJ, Huang JK, Krishnamoorthi R The solution structure of recombinant Cucurbita maxima trypsin...
nmrlearner Journal club 0 08-22-2010 02:27 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:04 AM.


Map