BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 03-16-2020, 04:59 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,174
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Sedimentation Yields Long-Term Stable Protein Samples as Shown by Solid-State NMR.

Sedimentation Yields Long-Term Stable Protein Samples as Shown by Solid-State NMR.

Related Articles Sedimentation Yields Long-Term Stable Protein Samples as Shown by Solid-State NMR.

Front Mol Biosci. 2020;7:17

Authors: Wiegand T, Lacabanne D, Torosyan A, Boudet J, Cadalbert R, Allain FH, Meier BH, Böckmann A

Abstract
Today, the sedimentation of proteins into a magic-angle spinning (MAS) rotor gives access to fast and reliable sample preparation for solid-state Nuclear Magnetic Resonance (NMR), and this has allowed for the investigation of a variety of non-crystalline protein samples. High protein concentrations on the order of 400 mg/mL can be achieved, meaning that around 50-60% of the NMR rotor content is protein; the rest is a buffer solution, which includes counter ions to compensate for the charge of the protein. We have demonstrated herein the long-term stability of four sedimented proteins and complexes thereof with nucleotides, comprising a bacterial DnaB helicase, an ABC transporter, an archaeal primase, and an RNA polymerase subunit. Solid-state NMR spectra recorded directly after sample filling and up to 5 years later indicated no spectral differences and no loss in signal intensity, allowing us to conclude that protein sediments in the rotor can be stable over many years. We have illustrated, using an example of an ABC transporter, that not only the structure is maintained, but that the protein is still functional after long-term storage in the sedimented state.


PMID: 32154263 [PubMed]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Protein delivery nanosystem of six-arm copolymer poly(ε-caprolactone)â??poly(ethylene glycol) for long-term sustained ... - Dove Medical Press
<img alt="" height="1" width="1"> Protein delivery nanosystem of six-arm copolymer poly(ε-caprolactone)â??poly(ethylene glycol) for long-term sustained ... Dove Medical Press Hydrogen-1 nuclear magnetic resonance spectrum, Fourier-transform infrared spectroscopy, and gel-permeation chromatography were conducted to identify the structure of 6S-PCL-PEG. The biocompatibility of the 6S-PCL-PEG was evaluated by a cell ... Protein delivery nanosystem of six-arm copolymer poly(ε-caprolactone)â??poly(ethylene glycol) for long-term sustained ... - Dove Medical Press More...
nmrlearner Online News 0 05-08-2018 02:41 PM
Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity
From The DNP-NMR Blog: Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity Sarkar, R., et al., Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity. Solid State Nucl Magn Reson, 2016. 76-77: p. 7-14. http://www.ncbi.nlm.nih.gov/pubmed/27017576
nmrlearner News from NMR blogs 0 07-22-2016 02:21 PM
[NMR paper] Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity.
Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity. Related Articles Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity. Solid State Nucl Magn Reson. 2016 Mar 15;76-77:7-14 Authors: Sarkar R, Mainz A, Busi B, Barbet-Massin E, Kranz M, Hofmann T, Reif B Abstract In recent years, MAS solid-state NMR has emerged as a technique for the investigation of soluble protein complexes. It was found that high molecular weight complexes do not need...
nmrlearner Journal club 0 03-29-2016 01:43 AM
Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity
Immobilization of soluble protein complexes in MAS solid-state NMR: Sedimentation versus viscosity Publication date: Available online 15 March 2016 Source:Solid State Nuclear Magnetic Resonance</br> Author(s): Riddhiman Sarkar, Andi Mainz, Baptiste Busi, Emeline Barbet-Massin, Maximilian Kranz, Thomas Hofmann, Bernd Reif</br> In recent years, MAS solid-state NMR has emerged as a technique for the investigation of soluble protein complexes. It was found that high molecular weight complexes do not need to be crystallized in order to obtain an immobilized...
nmrlearner Journal club 0 03-16-2016 12:13 AM
Improving protein solubility & long-term stability
Has anybody successfully used the following method? A simple method for improving protein solubility and long-term stability. Golovanov AP, Hautbergue GM, Wilson SA, Lian LY. Department of Biomolecular Sciences, University of Manchester Institute of Science and Technology, P. O. Box 88, Manchester M60 1QD, UK. a.golovanov@umist.ac.jp J Am Chem Soc. 2004 Jul 28;126(29):8933-9.
nmrlearner Proteins 4 01-22-2014 07:04 PM
[NMR paper] Yeast-expressed human membrane protein aquaporin-1 yields excellent resolution of solid-state MAS NMR spectra.
Yeast-expressed human membrane protein aquaporin-1 yields excellent resolution of solid-state MAS NMR spectra. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--production.springer.de-OnlineResources-Logos-springerlink.gif Related Articles Yeast-expressed human membrane protein aquaporin-1 yields excellent resolution of solid-state MAS NMR spectra. J Biomol NMR. 2013 Jan 24; Authors: Emami S, Fan Y, Munro R, Ladizhansky V, Brown LS Abstract One of the biggest challenges in solid-state NMR studies of membrane proteins is to obtain a...
nmrlearner Journal club 0 02-03-2013 10:19 AM
Long-term stability of human proteome
Long-term stability of human proteome http://www.spectroscopynow.com/common/images/thumbnails/13be29897a7.jpgThe abundances of 31 major proteins in human plasma, measured by selected reaction monitoring mass spectrometry, remained remarkably steady over 4 months, strengthening their case to be used as disease biomarkers. More...
nmrlearner News from NMR blogs 0 02-03-2013 09:08 AM
Long-Term-Stable Ether-Lipid vs Conventional Ester-Lipid Bicelles in Oriented Solid-State NMR: Altered Structural Information in Studies of Antimicrobial Peptides.
Long-Term-Stable Ether-Lipid vs Conventional Ester-Lipid Bicelles in Oriented Solid-State NMR: Altered Structural Information in Studies of Antimicrobial Peptides. Long-Term-Stable Ether-Lipid vs Conventional Ester-Lipid Bicelles in Oriented Solid-State NMR: Altered Structural Information in Studies of Antimicrobial Peptides. J Phys Chem B. 2011 Feb 10; Authors: Bertelsen K, Vad B, Nielsen EH, Hansen SK, Skrydstrup T, Otzen DE, Vosegaard T, Nielsen NC Recently, ether lipids have been introduced as long-term stable alternatives to the more natural,...
nmrlearner Journal club 0 02-12-2011 05:26 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 07:16 PM.


Map