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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 08-14-2010, 04:19 AM
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Default S3EPY: a Sparky extension for determination of small scalar couplings from spin-state

Abstract S3EPY is a Python extension to the program Sparky written to facilitate the assessment of coupling constants from in-phase/antiphase and spin-state-selective excitation (S3E) experiments. It enables the routine use of small scalar couplings by automating the coupling evaluation procedure. S3EPY provides an integrated graphical user interface to programs which outputs graphs and the table of determined couplings.
  • Content Type Journal Article
  • DOI 10.1007/s10858-009-9392-1
  • Authors
    • Petr Novák, Masaryk University National Centre for Biomolecular Research, Faculty of Science Kotlá?ská 2 611 37 Brno Czech Republic
    • Lukáš Ž*dek, Masaryk University National Centre for Biomolecular Research, Faculty of Science Kotlá?ská 2 611 37 Brno Czech Republic
    • Veronika Motá?ková, Masaryk University National Centre for Biomolecular Research, Faculty of Science Kotlá?ská 2 611 37 Brno Czech Republic
    • Petr Padrta, Masaryk University National Centre for Biomolecular Research, Faculty of Science Kotlá?ská 2 611 37 Brno Czech Republic
    • Alžb?ta *venková, Academy of Sciences of the Czech Republic Laboratory of Molecular Genetics of Bacteria, Institute of Microbiology V*de?ská 1083 142 20 Prague Czech Republic
    • Jean-Marc Nuzillard, CNRS, Institute de Chimie Moléculaire de Reims BP 1039 51687 REIMS Cedex 2 France
    • Libor Krásný, Academy of Sciences of the Czech Republic Laboratory of Molecular Genetics of Bacteria, Institute of Microbiology V*de?ská 1083 142 20 Prague Czech Republic
    • Vladim*r Sklená?, Masaryk University National Centre for Biomolecular Research, Faculty of Science Kotlá?ská 2 611 37 Brno Czech Republic

Source: Journal of Biomolecular NMR
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