BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-02-2017, 01:00 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,135
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Quick, sensitive serial NMR experiments with Radon transform.

Quick, sensitive serial NMR experiments with Radon transform.


Publication date: Available online 31 July 2017
Source:Journal of Magnetic Resonance

Author(s): Rupashree Dass, Pawe? Kasprzak, Krzysztof Kazimierczuk

The Radon transform is a potentially powerful tool for processing the data from serial spectroscopic experiments. It makes it possible to decode the rate at which frequencies of spectral peaks shift under the effect of changing conditions, such as temperature, pH, or solvent. In this paper we show how it also improves speed and sensitivity, especially in multidimensional experiments. This is particularly important in the case of low-sensitivity techniques, such as NMR spectroscopy. As an example, we demonstrate how Radon transform processing allows serial measurements of 15 N -HSQC spectra of unlabelled peptides that would otherwise be infeasible.
Graphical abstract








Source: Journal of Magnetic Resonance
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Folding of apomyoglobin: Analysis of transient intermediate structure during refolding using quick hydrogen deuterium exchange and NMR.
Folding of apomyoglobin: Analysis of transient intermediate structure during refolding using quick hydrogen deuterium exchange and NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkout.jstage.jst.go.jp-logo.gif Related Articles Folding of apomyoglobin: Analysis of transient intermediate structure during refolding using quick hydrogen deuterium exchange and NMR. Proc Jpn Acad Ser B Phys Biol Sci. 2017;93(1):10-27 Authors: Nishimura C Abstract The structures of apomyoglobin folding intermediates have...
nmrlearner Journal club 0 01-14-2017 06:24 AM
A toxic quick-change artist - Science Daily
http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcS4CJnt0cDYRc2ZoI4qnI7rBS4YCN0ysFWFdzkX1LhX7isCiO-aQsLHmXN4gZ2Wg69C-WU1qHE Science Daily <img alt="" height="1" width="1"> A toxic quick-change artist Science Daily Previously only two methods, X-ray crystallography and nuclear magnetic resonance, could provide such level of details. The former method necessitates however having crystals of the investigated protein, which in the case of transmembrane proteins has ... Researchers find answer to countering bio-weaponsswissinfo.ch all 3 news articles &raquo;
nmrlearner Online News 0 07-13-2016 10:22 PM
Speeding-up exchange-mediated saturation transfer experiments by Fourier transform
Speeding-up exchange-mediated saturation transfer experiments by Fourier transform Abstract Protein motions over various time scales are crucial for protein function. NMR relaxation dispersion experiments play a key role in explaining these motions. However, the study of slow conformational changes with lowly populated states remained elusive. The recently developed exchange-mediated saturation transfer experiments allow the detection and characterization of such motions, but require extensive measurement time. Here we show that, by making use of...
nmrlearner Journal club 0 09-10-2015 01:10 AM
[CNS Yahoo group] Fourier Transform in CNS
Fourier Transform in CNS Hi, I was wandering how the Fourier transform function is defined in CNS. When 'ft' is used, is it a normal fast-fourier-transform call or is there more to it? More...
nmrlearner News from other NMR forums 0 05-31-2012 03:59 AM
[CNS Yahoo group] Quick-and-dirty searches of both PDB and EMDB at PDBe
Quick-and-dirty searches of both PDB and EMDB at PDBe Hi all, As part of its recent winter update, the Protein Data Bank in Europe (PDBe; http://pdbe.org/) has improved its facility that allows for tandem searches More...
nmrlearner News from other NMR forums 0 04-01-2011 09:31 PM
[KPWU blog] HADDOCK on iMac and a quick benchmark
HADDOCK on iMac and a quick benchmark Recently I requested a copy of HADDOCK from Dr. Alexandre Bonvin in order to generate some docked dimers for my colleagues. They are working on some dimeric proteins but they have no idea how to obtain the dimeric conformation from homologous known structures. I spent few days reading the threads in the HADDOCK discussion group http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=285&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 03-29-2011 09:01 PM
[NMR images] Fourier transform NMR
http://hiq.linde-gas.com/international/web/lg/spg/like35lgspg.nsf/repositorybyalias/ana_meth_nmr_2/%24file/NMR_2.gif hiq.linde-gas.com 1/11/2010 8:52:48 AM GMT Fourier transform NMR More...
nmrlearner NMR pictures 0 11-10-2010 04:18 PM
[Question from NMRWiki Q&A forum] How to process and analyze serial 1D data nmrPipe?
How to process and analyze serial 1D data nmrPipe? Hi all,I am very new to nmrPipe. I want to achieve the following steps. It would be very kind if somebody helps. I have a 2D bruker data (t2= 4k points, t1= 32 points) and I want to do Fourier transform in the F2 dimension,phase etc. (2) and then extract the 32 spectra as 1Ds and also convert these 32 spectra in ascii format.(3) fit the peaks with a gaussian or Lorentzian function.(4) integrate the peak and save the integrals and time points as an ascii file. I only managed till the 1st step.Please help..!!
nmrlearner News from other NMR forums 0 10-28-2010 09:14 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 10:49 PM.


Map