BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 09-01-2017, 05:57 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 18,080
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Protein Assembly and Building Blocks: Beyond the Limitsof the LEGO Brick Metaphor

Protein Assembly and Building Blocks: Beyond the Limitsof the LEGO Brick Metaphor



Biochemistry
DOI: 10.1021/acs.biochem.7b00666



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Highly Ordered Self-Assembly of Native Proteins into 1D, 2D, and 3D Structures Modulated by the Tether Length of Assembly-Inducing Ligands
Highly Ordered Self-Assembly of Native Proteins into 1D, 2D, and 3D Structures Modulated by the Tether Length of Assembly-Inducing Ligands In nature, proteins are organized into highly ordered self-assembled structures with various morphologies and dimensions. In their Communication (DOI: 10.1002/anie.201703052), Y. Ma, G. Chen, and co-workers report the fabrication of protein assemblies by using native protein LecA as a building block through sugar–protein interactions and rhodamine dimerization. The morphologies and dimensions of the protein assemblies can be controlled by the length...
nmrlearner Journal club 0 07-19-2017 01:32 PM
Replication Protein A Blocks the Way
Replication Protein A Blocks the Way http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00221/20170323/images/medium/bi-2017-00221y_0001.gif Biochemistry DOI: 10.1021/acs.biochem.7b00221 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/yVnWE43laMc More...
nmrlearner Journal club 0 03-24-2017 10:00 AM
Support the #LEGO #NMR Spectrometer
From The DNP-NMR Blog: Support the #LEGO #NMR Spectrometer You may have come across pictures of an NMR spectrometer made entirely of LEGO bricks. This is currently supported on the LEGO Ideas pages: https://ideas.lego.com/projects/91495 As of today the project has 2548 supporters and there are 135 days left to support the project. If the project receives 10000 supporters LEGO may come up with a small kit to build a spectrometer. Please consider supporting this effort.
nmrlearner News from NMR blogs 0 03-03-2016 07:45 AM
[CNS Yahoo group] Oops-a-daisy! [Re: In the mood for some LEGO DNA to celebrate PDB40?
Oops-a-daisy! Hi again, It turns out that, due to copyright restrictions, our German friends cannot view the Lego-DNA clip on YouTube (no, it was not in retalliation for More...
nmrlearner News from other NMR forums 0 11-17-2011 01:47 AM
[CNS Yahoo group] Re: In the mood for some LEGO DNA to celebrate PDB40?
Re: In the mood for some LEGO DNA to celebrate PDB40? I don't get how this works with the "quantization" of the legos... JPK On Tue, Nov 15, 2011 at 1:27 PM, Kay Diederichs ... -- More...
nmrlearner News from other NMR forums 0 11-16-2011 11:41 AM
[CNS Yahoo group] Re: In the mood for some LEGO DNA to celebrate PDB40?
Re: In the mood for some LEGO DNA to celebrate PDB40? thanks - really nice indeed! Unfortunately, in Germany this video is blocked for Copyright reasons. The Firefox addon "proxtube" helps out ... best, Kay More...
nmrlearner News from other NMR forums 0 11-15-2011 11:36 PM
[CNS Yahoo group] In the mood for some LEGO DNA to celebrate PDB40?
In the mood for some LEGO DNA to celebrate PDB40? Hi all, I came across this YouTube clip the other day that is well worth 3 1/2 minutes of your time: http://www.youtube.com/watch?v=Dhs1YO5nqXA It was made by More...
nmrlearner News from other NMR forums 0 11-15-2011 11:36 PM
[NMR paper] Toward direct determination of conformations of protein building units from multidime
Toward direct determination of conformations of protein building units from multidimensional NMR experiments part II: a theoretical case study of formyl-L-valine amide. Related Articles Toward direct determination of conformations of protein building units from multidimensional NMR experiments part II: a theoretical case study of formyl-L-valine amide. Chemistry. 2001 Mar 2;7(5):1069-83 Authors: Perczel A, Császár AG Chemical shielding anisotropy tensors have been determined for all twenty-seven characteristic conformers of For-L-Val-NH2 using...
nmrlearner Journal club 0 11-19-2010 08:32 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2017, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 07:25 PM.


Map