BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 06-25-2020, 03:14 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,135
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default NMR resonance assignments of the programmed cell death protein 5 (PDCD5) from Toxoplasma gondii.

NMR resonance assignments of the programmed cell death protein 5 (PDCD5) from Toxoplasma gondii.

Related Articles NMR resonance assignments of the programmed cell death protein 5 (PDCD5) from Toxoplasma gondii.

Biomol NMR Assign. 2020 Jun 23;:

Authors: Lin MH, Yu TA, Chang CF, Nishikawa Y, Hsu CH

Abstract
Toxoplasmosis is a systematic protozoan disease caused by a tiny parasite Toxoplasma gondii. The infection can be dangerous for pregnant woman and people with weak immune systems. The secreted protein named TgPDCD5 (Programmed cell death protein 5 from Toxoplasma gondii) plays an important role in apoptosis-inducing effect on host cells. Here, we report the 1H, 13C, and 15N resonance assignments of TgPDCD5. This work provides the ground for further structural elucidate and biophysical investigation about protein function.


PMID: 32578164 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Programmed cell death: Solid-state NMR insights
Programmed cell death: Solid-state NMR insights http://www.spectroscopynow.com/common/images/thumbnails/169b46e7c0b.jpgResearchers from The Netherlands and the USA have used solid-state nuclear magnetic resonance (NMR) spectroscopy to show how the signal induced by the enzyme cytochrome C is more controlled than was originally anticipated. The discovery could have implications for understanding mitochondria and programmed cell death. Read the rest at Spectroscopynow.com
nmrlearner General 0 04-02-2019 01:35 AM
[NMR paper] 1H, 13C, 15N NMR resonance assignments and secondary structure determination of the extra-cellular domain from the human proapoptotic TRAIL-R2 death receptor 5 (DR5-ECD).
1H, 13C, 15N NMR resonance assignments and secondary structure determination of the extra-cellular domain from the human proapoptotic TRAIL-R2 death receptor 5 (DR5-ECD). 1H, 13C, 15N NMR resonance assignments and secondary structure determination of the extra-cellular domain from the human proapoptotic TRAIL-R2 death receptor 5 (DR5-ECD). Biomol NMR Assign. 2018 Jun 05;: Authors: Baudin A, Guichard A, Collie GW, Rousseau S, Chaignepain S, Hocquellet A, Berbon M, Loquet A, Mackereth C, Guichard G, Odaert B Abstract Death...
nmrlearner Journal club 0 06-06-2018 01:42 PM
'Rheostat' identified that helps regulate cell death versus survival decisions - Phys.Org
http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcRRgmdouMLffzhui4bI-9zmifhZCNSw-SZDoZb92H0UvEvAnArK8VB26wYu7CPNl79gpMJ2-Lno Phys.Org <img alt="" height="1" width="1"> 'Rheostat' identified that helps regulate cell death versus survival decisions Phys.Org Researchers used nuclear magnetic resonance (NMR) spectroscopy and other tests to determine how modification of the protein's IDR influenced cell survival. For example, investigators reported that "adjusting" an amino acid in the intrinsically ... 'Rheostat' identified that helps regulate cell death versus survival...
nmrlearner Online News 0 03-06-2018 03:20 PM
Alternative Splice Means Anchors Aweigh for Cell Death Protein - Genetic Engineering & Biotechnology News
Alternative Splice Means Anchors Aweigh for Cell Death Protein - Genetic Engineering & Biotechnology News <img alt="" height="1" width="1"> Alternative Splice Means Anchors Aweigh for Cell Death Protein Genetic Engineering & Biotechnology News "By employing nuclear magnetic resonance (NMR) spectroscopy at the Bavarian NMR Center in Garching, we were able to elucidate the spatial structure of RBM5-OCRE in complex with SmN (a protein present in the spliceosome) and to understand exactly ... Read here
nmrlearner Online News 0 12-01-2016 12:20 AM
Apoptosis Inducing Factor Binding Protein PGAM5 TriggersMitophagic Cell Death That Is Inhibited by the Ubiquitin Ligase Activityof X-Linked Inhibitor of Apoptosis
Apoptosis Inducing Factor Binding Protein PGAM5 TriggersMitophagic Cell Death That Is Inhibited by the Ubiquitin Ligase Activityof X-Linked Inhibitor of Apoptosis http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00306/20160601/images/medium/bi-2016-003067_0010.gif Biochemistry DOI: 10.1021/acs.biochem.6b00306 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/B9hzsL2NEXs More...
nmrlearner Journal club 0 06-03-2016 03:35 AM
Preventing Cell Death in Alzheimer's Disease - PsychCentral.com (blog)
http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQ6EI6E9FoMt3NZH6Gbb1J55Zk_5GDDrn2mHXxl5K_R_UwFkw4OiLs8wTq4WIMN-pKxPKesU5s PsychCentral.com (blog) <img alt="" height="1" width="1"> Preventing Cell Death in Alzheimer's Disease PsychCentral.com (blog) The scientists used a procedure called solid-state nuclear magnetic resonance spectroscopy (solid-state NMR) to identify sites in heat shock proteins called alpha-B-crystallin that attach to the beta-amyloid. But this process is difficult as alpha-B ... and more &raquo; Preventing Cell Death in Alzheimer's Disease -...
nmrlearner Online News 0 03-29-2016 04:59 PM
Researchers uncover new mechanism that p53 protein uses to trigger cell death - News-Medical.net
Researchers uncover new mechanism that p53 protein uses to trigger cell death - News-Medical.net <img alt="" height="1" width="1"> Researchers uncover new mechanism that p53 protein uses to trigger cell death News-Medical.net Researchers have identified a new mechanism that the tumor suppressor protein p53 uses to trigger cell death via apoptosis and have shown how the process could be harnessed to kill cancer cells. St. Jude Children's Research Hospital scientists led the ... and more &raquo; Read here
nmrlearner Online News 0 07-31-2015 07:53 PM
NMR Studies of the Interactionbetween Human Programmed Cell Death 5 and Human p53
NMR Studies of the Interactionbetween Human Programmed Cell Death 5 and Human p53 http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi201822x/aop/images/medium/bi-2011-01822x_0006.gif Biochemistry DOI: 10.1021/bi201822x http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/EP2xmvNmj2Q More...
nmrlearner Journal club 0 03-20-2012 10:52 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:36 AM.


Map