BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 12-29-2015, 08:05 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,134
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy.

New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy.

Related Articles New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy.

J Mol Biol. 2015 Dec 18;

Authors: Kay LE

Abstract
In the past several decades solution NMR spectroscopy has emerged as a powerful technique for the study of the structure and dynamics of proteins, providing detailed insights into biomolecular function. Herein I provide a summary of two important areas of application, focusing on NMR studies of (i) supra-molecular systems with aggregate molecular masses in the hundreds of kDa and of (ii) sparsely populated and transiently formed protein states that are thermally accessible from populated ground state conformations. The critical role of molecular dynamics in function is emphasized, highlighting the utility of the NMR technique in providing such often elusive information.


PMID: 26707200 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy
New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy Publication date: Available online 19 December 2015 Source:Journal of Molecular Biology</br> Author(s): Lewis E. Kay</br> In the past several decades solution NMR spectroscopy has emerged as a powerful technique for the study of the structure and dynamics of proteins, providing detailed insights into biomolecular function. Herein I provide a summary of two important areas of application, focusing on NMR studies of (i) supra-molecular systems with aggregate molecular masses in the hundreds of...
nmrlearner Journal club 0 12-28-2015 12:26 AM
[NMR paper] Solution NMR Spectroscopy Provides an Avenue for the Study of Functionally Dynamic Molecular Machines: The Example of Protein Disaggregation.
Solution NMR Spectroscopy Provides an Avenue for the Study of Functionally Dynamic Molecular Machines: The Example of Protein Disaggregation. Solution NMR Spectroscopy Provides an Avenue for the Study of Functionally Dynamic Molecular Machines: The Example of Protein Disaggregation. J Am Chem Soc. 2015 Dec 11; Authors: Rosenzweig R, Kay LE Abstract Solution-based NMR spectroscopy has been an important tool for studying the structure and dynamics of relatively small proteins and protein complexes with aggregate molecular masses...
nmrlearner Journal club 0 12-15-2015 08:09 PM
Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins
From The DNP-NMR Blog: Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins Valentine, K.G., et al., Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins. J Am Chem Soc, 2014. 136(7): p. 2800-7. http://pubs.acs.org/doi/abs/10.1021/ja4107176
nmrlearner News from NMR blogs 0 03-27-2014 03:46 AM
ReverseMicelles As a Platform for Dynamic NuclearPolarization in Solution NMR of Proteins
ReverseMicelles As a Platform for Dynamic NuclearPolarization in Solution NMR of Proteins Kathleen G. Valentine, Guinevere Mathies, Sabrina Be?dard, Nathaniel V. Nucci, Igor Dodevski, Matthew A. Stetz, Thach V. Can, Robert G. Griffin and A. Joshua Wand http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja4107176/aop/images/medium/ja-2013-107176_0008.gif Journal of the American Chemical Society DOI: 10.1021/ja4107176 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/n5rOYKW5lE8
nmrlearner Journal club 0 02-05-2014 06:08 PM
[NMR paper] Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins.
Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins. Related Articles Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins. J Am Chem Soc. 2014 Jan 24; Authors: Valentine KG, Mathies G, Bédard S, Nucci NV, Dodevski I, Stetz MA, Can TV, Griffin RG, Wand AJ Abstract Despite tremendous advances in recent years, solution NMR remains fundamentally restricted due to its inherent insensitivity. Dynamic nuclear polarization (DNP) potentially offers significant...
nmrlearner Journal club 0 01-25-2014 02:07 PM
Solution NMR Evidence for Symmetry in Functionally or Crystallographically Asymmetric Homodimers
Solution NMR Evidence for Symmetry in Functionally or Crystallographically Asymmetric Homodimers Raquel Godoy-Ruiz, Anna Krejcirikova, D. Travis Gallagher and Vitali Tugarinov http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja206967d/aop/images/medium/ja-2011-06967d_0005.gif Journal of the American Chemical Society DOI: 10.1021/ja206967d http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/Y_QrFWfv--4
nmrlearner Journal club 0 11-15-2011 10:36 AM
[KPWU blog] Some cartoon views of proteins shown in PyMOL
Some cartoon views of proteins shown in PyMOL Example of cartoon modes of protein shown by PyMOL Example protein: 1UA8, LolA By default, the cartoon mode in PyMOL shows protein structure like this way: We can change the background to white by typing “bg_color white” in the command terminal and also change the color of protein based on types of secondary structures in http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=526&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 10-05-2011 08:52 AM
[NMR paper] Dynamic properties of proteins from NMR spectroscopy.
Dynamic properties of proteins from NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Dynamic properties of proteins from NMR spectroscopy. Curr Opin Biotechnol. 1993 Aug;4(4):385-91 Authors: Palmer AG Two-dimensional proton-detected heteronuclear nuclear magnetic resonance spectroscopy has been used to measure 13C and 15N spin-relaxation rate constants for several proteins. Generalized order parameters and effective internal correlation times have been...
nmrlearner Journal club 0 08-22-2010 03:01 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:37 PM.


Map