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NMR processing:
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PINE
Side-chains:
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NOEs:
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UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
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Fragment-based:
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Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
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Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
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Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
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RDCs:
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Pseudocontact shifts:
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Protein geomtery:
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SAVES2 or SAVES4
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Ramachandran Plot
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Verify_3D
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NMR spectrum prediction:
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V-NMR
Flexibility from structure:
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Methyl S2
B-factor
Molecular dynamics:
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Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Default Insights into co-translational membrane protein insertion by combined LILBID-mass spectrometry and NMR spectroscopy.

Insights into co-translational membrane protein insertion by combined LILBID-mass spectrometry and NMR spectroscopy.

Related Articles Insights into co-translational membrane protein insertion by combined LILBID-mass spectrometry and NMR spectroscopy.

Anal Chem. 2017 Oct 17;:

Authors: Peetz O, Henrich E, Laguerre A, L?hr F, Hein C, Dötsch V, Bernhard F, Morgner N

Abstract
Co-translational insertion of membrane proteins into defined nanoparticle membranes has been developed as an efficient process to produce highly soluble samples in native-like environments and to study lipid dependent effects on protein structure and function. Numerous examples of structural and functional characterization of transporters, ion channels or G-protein coupled receptors in co-translationally formed nanodisc complexes demonstrate the versatility of this approach, although the basic underlying mechanisms of membrane insertion are mainly unknown. We have revealed first aspects of the insertion of proteins into nanodiscs by combining cell-free expression, non-covalent mass spectrometry and NMR spectroscopy. We provide evidence of cooperative insertion of homooligomeric complexes and demonstrate the possibility to modulate their stoichiometry by modifying reaction conditions. Additionally, we show that significant amounts of lipid are released from the nanodiscs upon insertion of larger protein complexes.


PMID: 29039652 [PubMed - as supplied by publisher]



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