BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rating: Thread Rating: 1 votes, 1.00 average. Display Modes
  #1  
Unread 02-28-2018, 01:42 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,169
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Improved Analysis of RNA Localization by SpatiallyRestricted Oxidation of RNA–Protein Complexes

Improved Analysis of RNA Localization by SpatiallyRestricted Oxidation of RNA–Protein Complexes



Biochemistry
DOI: 10.1021/acs.biochem.8b00053



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
A Fluorescent Probe with Improved Water SolubilityPermits the Analysis of Protein S-DepalmitoylationActivity in Live Cells
A Fluorescent Probe with Improved Water SolubilityPermits the Analysis of Protein S-DepalmitoylationActivity in Live Cells http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00835/20171018/images/medium/bi-2017-00835x_0005.gif Biochemistry DOI: 10.1021/acs.biochem.7b00835 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/D_OdeXwPKoc More...
nmrlearner Journal club 0 10-19-2017 08:03 AM
Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS - GenomeWeb
Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS - GenomeWeb <img alt="" height="1" width="1"> Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS GenomeWeb Pasteur Institute researcher Michael Nilges, senior author on the paper, previously tackled a similar problem with using NMR data for elucidating the structures of small proteins, and, Beck said, here Nilges and his co-authors adopted that approach to ... Read here
nmrlearner Online News 0 04-30-2016 09:26 AM
[NMR paper] Analysis of the interface variability in NMR structure ensembles of protein-protein complexes.
Analysis of the interface variability in NMR structure ensembles of protein-protein complexes. Related Articles Analysis of the interface variability in NMR structure ensembles of protein-protein complexes. J Struct Biol. 2016 Mar 8; Authors: Calvanese L, D'Auria G, Vangone A, Falcigno L, Oliva R Abstract NMR structures consist in ensembles of conformers, all satisfying the experimental restraints, which exhibit a certain degree of structural variability. We analyzed here the interface in NMR ensembles of protein-protein...
nmrlearner Journal club 0 03-13-2016 04:25 PM
Analysis of the interface variability in NMR structure ensembles of protein-protein complexes
Analysis of the interface variability in NMR structure ensembles of protein-protein complexes Publication date: Available online 9 March 2016 Source:Journal of Structural Biology</br> Author(s): Luisa Calvanese, Gabriella D’Auria, Anna Vangone, Lucia Falcigno, Romina Oliva</br> NMR structures consist in ensembles of conformers, all satisfying the experimental restraints, which exhibit a certain degree of structural variability. We analyzed here the interface in NMR ensembles of protein-protein heterodimeric complexes and found it to span a wide range of...
nmrlearner Journal club 0 03-09-2016 06:23 AM
[NMR paper] Structural Analysis of Protein-RNA Complexes in Solution Using NMR Paramagnetic Relaxation Enhancements.
Structural Analysis of Protein-RNA Complexes in Solution Using NMR Paramagnetic Relaxation Enhancements. Related Articles Structural Analysis of Protein-RNA Complexes in Solution Using NMR Paramagnetic Relaxation Enhancements. Methods Enzymol. 2015;558:333-362 Authors: Hennig J, Warner LR, Simon B, Geerlof A, Mackereth CD, Sattler M Abstract Biological activity in the cell is predominantly mediated by large multiprotein and protein-nucleic acid complexes that act together to ensure functional fidelity. Nuclear magnetic resonance...
nmrlearner Journal club 0 06-13-2015 11:09 PM
[NMR paper] Rapid analysis of large protein-protein complexes using NMR-derived orientational con
Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: the 95 kDa complex of LpxA with acyl carrier protein. Related Articles Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: the 95 kDa complex of LpxA with acyl carrier protein. J Mol Biol. 2004 Nov 5;343(5):1379-89 Authors: Jain NU, Wyckoff TJ, Raetz CR, Prestegard JH Characterization of protein-protein interactions that are critical to the specific function of many biological systems has become a primary...
nmrlearner Journal club 0 11-24-2010 10:03 PM
[NMR paper] 31P NMR analysis of the DNA conformation induced by protein binding SRY/DNA complexes
31P NMR analysis of the DNA conformation induced by protein binding SRY/DNA complexes. Related Articles 31P NMR analysis of the DNA conformation induced by protein binding SRY/DNA complexes. Eur J Biochem. 2000 Feb;267(4):1223-9 Authors: Castagné C, Murphy EC, Gronenborn AM, Delepierre M Complexes of the HMG box protein SRY with two duplexes of 8 and 14 base pairs have been studied by 31P NMR and complete assignment of all phosphorus signals of the bound DNA duplexes are presented. While for the free DNA, all 31P signals display limited...
nmrlearner Journal club 0 11-18-2010 09:15 PM
NMR and Small Angle Scattering-based structural analysis of protein complexes in solu
NMR and Small Angle Scattering-based structural analysis of protein complexes in solution. Related Articles NMR and Small Angle Scattering-based structural analysis of protein complexes in solution. J Struct Biol. 2010 Nov 10; Authors: Madl T, Gabel F, Sattler M Structural analysis of multi-domain protein complexes is a key challenge in current biology and a prerequisite for understanding the molecular basis of essential cellular processes. The use of solution techniques is important for characterizing the quaternary arrangements and dynamics of...
nmrlearner Journal club 0 11-16-2010 04:13 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 10:21 PM.


Map