High-Density Lipoprotein Biogenesis: Defining theDomains Involved in Human Apolipoprotein A-I Lipidation

		BioNMR > Educational resources > Journal club
High-Density Lipoprotein Biogenesis: Defining theDomains Involved in Human Apolipoprotein A-I Lipidation

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-24-2016, 04:35 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,185

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

High-Density Lipoprotein Biogenesis: Defining theDomains Involved in Human Apolipoprotein A-I Lipidation

High-Density Lipoprotein Biogenesis: Defining theDomains Involved in Human Apolipoprotein A-I Lipidation

Biochemistry
DOI: 10.1021/acs.biochem.6b00347

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Distinct Roles of Apolipoproteins A1 and E in theModulation of High-Density Lipoprotein Composition and Function Distinct Roles of Apolipoproteins A1 and E in theModulation of High-Density Lipoprotein Composition and Function http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00389/20160629/images/medium/bi-2016-00389n_0009.gif Biochemistry DOI: 10.1021/acs.biochem.6b00389 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/NkgRuTkj7GA More...	nmrlearner	Journal club	0	06-30-2016 02:26 AM
[NMR paper] Apolipoprotein-defined and NMR lipoprotein subclasses in the veterans affairs diabetes trial. Apolipoprotein-defined and NMR lipoprotein subclasses in the veterans affairs diabetes trial. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Apolipoprotein-defined and NMR lipoprotein subclasses in the veterans affairs diabetes trial. J Diabetes Complications. 2013 Nov-Dec;27(6):627-32 Authors: Azar M, Lyons TJ, Alaupovic P, Stoner JA, Quiroga C, Kaufman DG, Lopes-Virella M, Klein RL, Jenkins AJ, VADT Study Group Abstract	nmrlearner	Journal club	0	07-02-2014 02:37 PM
Backbone and side chain NMR resonance assignments for an archaeal homolog of the endonuclease Nob1 involved in ribosome biogenesis. Backbone and side chain NMR resonance assignments for an archaeal homolog of the endonuclease Nob1 involved in ribosome biogenesis. Backbone and side chain NMR resonance assignments for an archaeal homolog of the endonuclease Nob1 involved in ribosome biogenesis. Biomol NMR Assign. 2011 Jul 6; Authors: Veith T, Wurm JP, Duchardt-Ferner E, Weis B, Martin R, Safferthal C, Bohnsack MT, Schleiff E, Wöhnert J Eukaryotic ribosome biogenesis requires the concerted action of ~200 auxiliary protein factors on the nascent ribosome. For many of these...	nmrlearner	Journal club	0	07-07-2011 05:12 PM
[NMR paper] NMR assignment of human ASC2, a self contained protein interaction domain involved in NMR assignment of human ASC2, a self contained protein interaction domain involved in apoptosis and inflammation. Related Articles NMR assignment of human ASC2, a self contained protein interaction domain involved in apoptosis and inflammation. J Biomol NMR. 2002 Jun;23(2):151-2 Authors: Espejo F, Green M, Preece NE, Assa-Munt N	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMR paper] NMR structure of human apolipoprotein C-II in the presence of sodium dodecyl sulfate. NMR structure of human apolipoprotein C-II in the presence of sodium dodecyl sulfate. Related Articles NMR structure of human apolipoprotein C-II in the presence of sodium dodecyl sulfate. Biochemistry. 2001 May 8;40(18):5414-21 Authors: MacRaild CA, Hatters DM, Howlett GJ, Gooley PR The structure and protein-detergent interactions of apolipoprotein C-II (apoC-II) in the presence of SDS micelles have been investigated using circular dichroism and heteronuclear NMR techniques applied to (15)N-labeled protein. Micellar SDS, a commonly used...	nmrlearner	Journal club	0	11-19-2010 08:32 PM
[NMR paper] NMR solution structure of complement-like repeat CR3 from the low density lipoprotein NMR solution structure of complement-like repeat CR3 from the low density lipoprotein receptor-related protein. Evidence for specific binding to the receptor binding domain of human alpha(2)-macroglobulin. Related Articles NMR solution structure of complement-like repeat CR3 from the low density lipoprotein receptor-related protein. Evidence for specific binding to the receptor binding domain of human alpha(2)-macroglobulin. J Biol Chem. 2000 Feb 4;275(5):3264-9 Authors: Dolmer K, Huang W, Gettins PG We have used NMR methods to determine the...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
[NMR paper] NMR analysis of low-density lipoprotein oxidatively-modified in vitro. NMR analysis of low-density lipoprotein oxidatively-modified in vitro. Related Articles NMR analysis of low-density lipoprotein oxidatively-modified in vitro. Free Radic Res Commun. 1990;8(3):175-83 Authors: Barenghi L, Bradamante S, Giudici GA, Vergani C Human plasma low density lipoprotein has been oxidized at different stages in vitro and analysed by 1H, 13C, and 31P NMR spectroscopy and by biochemical methods. Information was obtained on: a) structure mobilities of lipids and on lipid-protein interactions; b) conjugated and oxo-dienes; c)...	nmrlearner	Journal club	0	08-21-2010 10:48 PM
[NMR paper] NMR solution structure of complement-like repeat CR8 from the low density lipoprotein NMR solution structure of complement-like repeat CR8 from the low density lipoprotein receptor-related protein. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--highwire.stanford.edu-icons-externalservices-pubmed-standard-jbc_full_free.gif Related Articles NMR solution structure of complement-like repeat CR8 from the low density lipoprotein receptor-related protein. J Biol Chem. 1999 May 14;274(20):14130-6 Authors: Huang W, Dolmer K, Gettins PG The low density lipoprotein receptor-related protein is a member of the low density...	nmrlearner	Journal club	0	08-21-2010 04:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off