BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 05-22-2018, 08:59 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,175
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Cryptophane nanoscale assemblies expand 129Xe NMR biosensing.

Cryptophane nanoscale assemblies expand 129Xe NMR biosensing.

Related Articles Cryptophane nanoscale assemblies expand 129Xe NMR biosensing.

Anal Chem. 2018 May 21;:

Authors: Zemerov SD, Roose BW, Greenberg ML, Wang Y, Dmochowski IJ

Abstract
Cryptophane-based biosensors are promising agents for the ultrasensitive detection of biomedically relevant targets via 129Xe NMR. Dynamic light scattering revealed that cryptophanes form water-soluble aggregates of tens-to-hundreds of nanometers in size. Acridine orange fluorescence quenching assays allowed quantitation of aggregation state, with critical concentration rang-ing from 200 to 600 nM, depending on the cryptophane species in solution. Addition of excess carbonic anhydrase (CA) pro-tein target to a benzenesulfonamide-functionalized cryptophane biosensor (C8B) led to C8B disaggregation and produced the expected 1:1 C8B-CA complex. C8B showed higher affinity at 298 K for the cytoplasmic isozyme CAII than the extracellular CAXII isozyme, a biomarker of cancer. Using hyper-CEST NMR, we explored the role of stoichiometry in detecting these two isozymes. At CA-saturating conditions, we observed that isozyme CAII produces a larger 129Xe NMR chemical shift change (?= 5.9 ppm, relative to free biosensor) than CAXII (?= 2.7 ppm), which indicates the strong potential for isozyme-specific detec-tion. However, stoichiometry-dependent chemical shift data indicated that biosensor disaggregation contributes to the observed 129Xe NMR chemical shift change that is normally assigned to biosensor-target binding. Finally, we determined that monomeric cryptophane solutions improve hyper-CEST saturation contrast, which enables ultrasensitive detection of biosensor-protein complexes. These insights into cryptophane-solution behavior support further development of xenon biosensors, but will re-quire reinterpretation of the data previously obtained for many water-soluble cryptophanes.


PMID: 29782149 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Protein Crystallization Market to Expand with Significant CAGR â?? 2025 - Business Services
Protein Crystallization Market to Expand with Significant CAGR â?? 2025 - Business Services <img alt="" height="1" width="1"> Protein Crystallization Market to Expand with Significant CAGR â?? 2025 Business Services New and innovative product launches by key manufacturers are also projected to drive the demand for protein crystallization in the near future. However, factors such as lack of qualified and experienced researchers and crystallizing a protein without ... Read here
nmrlearner Online News 0 04-05-2018 01:42 PM
[NMR paper] Mixed Fluorotryptophan Substitutions at the Same Residue Expand the Versatility of ¹?F Protein NMR Spectroscopy.
Mixed Fluorotryptophan Substitutions at the Same Residue Expand the Versatility of ¹?F Protein NMR Spectroscopy. Mixed Fluorotryptophan Substitutions at the Same Residue Expand the Versatility of ¹?F Protein NMR Spectroscopy. Chemistry. 2018 Jan 17;: Authors: Kenward C, Shin K, Rainey J Abstract The strategy of applying fluorine NMR to characterize ligand binding to a membrane protein prepared with mixtures of tryptophans substituted with F at different positions on the indole ring was tested. The ¹?F NMR behavior of 4-, 5-, 6-,...
nmrlearner Journal club 0 01-18-2018 12:41 PM
GSK, Avalon expand biotech deal - The San Diego Union-Tribune
<img alt="" height="1" width="1"> GSK, Avalon expand biotech deal The San Diego Union-Tribune The SBP researchers used multiple methods to find and verify this particular protein-protein interaction, including molecular modeling, biophysics, nuclear magnetic resonance spectroscopy and synthetic chemistry to slowly design a molecule that blocks ... and more &raquo; GSK, Avalon expand biotech deal - The San Diego Union-Tribune More...
nmrlearner Online News 0 11-09-2015 05:03 PM
[NMR paper] Cryptophane-folate biosensor for (129)xe NMR.
Cryptophane-folate biosensor for (129)xe NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles Cryptophane-folate biosensor for (129)xe NMR. Bioconjug Chem. 2015 Jan 21;26(1):101-9 Authors: Khan NS, Riggle BA, Seward GK, Bai Y, Dmochowski IJ Abstract Folate-conjugated cryptophane was developed for targeting cryptophane to membrane-bound folate receptors that are overexpressed in many human cancers. The cryptophane biosensor was synthesized in 20...
nmrlearner Journal club 0 09-18-2015 11:20 PM
[NMR paper] Cell-compatible, integrin-targeted cryptophane-(129)Xe NMR biosensors.
Cell-compatible, integrin-targeted cryptophane-(129)Xe NMR biosensors. Related Articles Cell-compatible, integrin-targeted cryptophane-(129)Xe NMR biosensors. Chem Sci. 2011 Jun;2(6):1103-1110 Authors: Seward GK, Bai Y, Khan NS, Dmochowski IJ Abstract Peptide-modified cryptophane enables sensitive detection of protein analytes using hyperpolarized (129)Xe NMR spectroscopy. Here we report improved targeting and delivery of cryptophane to cells expressing ?v?3 integrin receptor, which is overexpressed in many human cancers....
nmrlearner Journal club 0 11-06-2014 08:45 PM
Diamond defects shrink MRI to the nanoscale - Nature.com
http://www.bionmr.com//nt1.ggpht.com/news/tbn/rbIxnOKpKqdUoM/6.jpg Nature.com <img alt="" height="1" width="1" /> Diamond defects shrink MRI to the nanoscale Nature.com Diamond-based quantum devices can now make nuclear magnetic resonance measurements on the molecular scale. Work by two independent groups will make it easier to find out the structure of single biological molecules such as proteins without ... Nanoscale MRI being developedPhys.Org Taking NMR And MRI To The NanoscaleThe Biological SCENE Next Generation: Nano-ImagingScientist separationsNOW.com (press release)
nmrlearner Online News 0 02-01-2013 03:04 PM
Diamond defects produce nanoscale MRI - Nature.com
http://www.bionmr.com//nt1.ggpht.com/news/tbn/rbIxnOKpKqdUoM/6.jpg Nature.com <img alt="" height="1" width="1" /> Diamond defects produce nanoscale MRI Nature.com Diamond-based quantum devices can now make nuclear magnetic resonance measurements on the molecular scale. Work by two independent groups will make it easier to find out the structure of single biological molecules such as proteins without ... Next Generation: Nano-ImagingScientist Diamond NMR probes single moleculesseparationsNOW.com (press release) all 3 news articles &raquo;
nmrlearner Online News 0 02-01-2013 03:03 AM
[NMR images] Fundamentals of Protein NMR Spectroscopy by Rule, Gordon, Hitchens, T. Kevin,. Expand Image
http://images.betterworldbooks.com/140/Fundamentals-of-Protein-NMR-Spectroscopy-9781402034992.jpg betterworldbooks.com 17/03/2011 6:31:23 PM GMT Fundamentals of Protein NMR Spectroscopy by Rule, Gordon, Hitchens, T. Kevin,. Expand Image More...
nmrlearner NMR pictures 0 03-21-2011 07:27 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 11:59 PM.


Map