Chemical Shift Tensor – the Heart of NMR : Insights into Biological Aspects of Protei

		BioNMR > Educational resources > Journal club
Chemical Shift Tensor – the Heart of NMR : Insights into Biological Aspects of Protei

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-16-2010, 03:50 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,174

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Chemical Shift Tensor – the Heart of NMR : Insights into Biological Aspects of Protei

Chemical Shift Tensor – the Heart of NMR : Insights into Biological Aspects of Proteins

Publication year: 2010
Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 7 May 2010

Hazime, Saitô , Isao, Ando , Ayyalusamy, Ramamoorthy

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR tweet] Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Nat... http://amzn.to/jyZcTM Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Nat... http://amzn.to/jyZcTM Published by Arakawa6458 (?? ??) on 2011-05-16T11:27:46Z Source: Twitter	nmrlearner	Twitter NMR	0	05-16-2011 11:30 AM
[NMR tweet] Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Nat... http://amzn.to/jyZcTM Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Nat... http://amzn.to/jyZcTM Published by Watanabe3700 (?? ?) on 2011-05-14T18:39:20Z Source: Twitter	nmrlearner	Twitter NMR	0	05-14-2011 06:41 PM
[NMR tweet] Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Nat... http://amzn.to/lm4K6s Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Nat... http://amzn.to/lm4K6s Published by Ranawx51 (Rana Teitenberg) on 2011-05-01T22:18:41Z Source: Twitter	nmrlearner	Twitter NMR	0	05-01-2011 10:36 PM
Analysis of the amide 15N chemical shift tensor of the CÎ± tetrasubstituted constituent of membrane-active peptaibols, the Î±-aminoisobutyric acid residue, compared to those of di- and tri-substituted proteinogenic amino acid residues Analysis of the amide 15N chemical shift tensor of the CÎ± tetrasubstituted constituent of membrane-active peptaibols, the Î±-aminoisobutyric acid residue, compared to those of di- and tri-substituted proteinogenic amino acid residues <div class="Abstract">Abstract In protein NMR spectroscopy the chemical shift provides important information for the assignment of residues and a first structural evaluation of dihedral angles. Furthermore, angular restraints are obtained from oriented samples by solution and solid-state NMR spectroscopic approaches. Whereas the anisotropy of chemical...	nmrlearner	Journal club	0	01-09-2011 12:46 PM
[NMR paper] 31P-NMR analysis of congestive heart failure in the SHHF/Mcc-facp rat heart. 31P-NMR analysis of congestive heart failure in the SHHF/Mcc-facp rat heart. Related Articles 31P-NMR analysis of congestive heart failure in the SHHF/Mcc-facp rat heart. J Mol Cell Cardiol. 1998 Feb;30(2):235-41 Authors: Michael O'Donnell J, Narayan P, Bailey MQ, Abduljalil AM, Altschuld RA, McCune SA, Robitaille PM 31P-NMR was used to monitor myocardial bioenergetics in compensated and failing SHHF/MCC-fa(cp) (SHF) rat hearts. The SHHF/Mcc-fa(cp) (spontaneous hypertension and heart failure) rat is a relatively new genetic model in which...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
Determination of relative tensor orientations by ?-encoded chemical shift anisotropy/ Determination of relative tensor orientations by ?-encoded chemical shift anisotropy/heteronuclear dipolar coupling 3D NMR spectroscopy in biological solids. Related Articles Determination of relative tensor orientations by ?-encoded chemical shift anisotropy/heteronuclear dipolar coupling 3D NMR spectroscopy in biological solids. Phys Chem Chem Phys. 2010 Oct 8; Authors: Hou G, Paramasivam S, Byeon IJ, Gronenborn AM, Polenova T In this paper, we present 3D chemical shift anisotropy (CSA)/dipolar coupling correlation experiments, based on ?-encoded...	nmrlearner	Journal club	0	10-12-2010 02:52 PM
[NMR paper] 1H NMR structure and biological studies of the His23-->Cys mutant nucleocapsid protei 1H NMR structure and biological studies of the His23-->Cys mutant nucleocapsid protein of HIV-1 indicate that the conformation of the first zinc finger is critical for virus infectivity. Related Articles 1H NMR structure and biological studies of the His23-->Cys mutant nucleocapsid protein of HIV-1 indicate that the conformation of the first zinc finger is critical for virus infectivity. Biochemistry. 1994 Oct 4;33(39):11707-16 Authors: DÃ©mÃ©nÃ© H, Dong CZ, Ottmann M, Rouyez MC, Jullian N, Morellet N, Mely Y, Darlix JL, FourniÃ©-Zaluski MC, Saragosti S ...	nmrlearner	Journal club	0	08-22-2010 03:29 AM
Effect of site-specific variation of CSA and 15N chemical shielding tensor on model-free order parameter :rolleyes: Variability of the 15N Chemical Shielding Tensors in the B3 Domain of Protein G from 15N Relaxation Measurements at Several Fields. Implications for Backbone Order Parameters Jennifer B. Hall and David Fushman J. Am. Chem. Soc., 128 (24), 7855 -7870, 2006.	nmrlearner	Journal club	0	06-14-2006 11:17 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off