BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 07-03-2021, 08:12 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 21,266
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Brownian motion, spin diffusion and protein structure determination in solution

Brownian motion, spin diffusion and protein structure determination in solution

Publication date: Available online 2 July 2021

Source: Journal of Magnetic Resonance

Author(s): Kurt Wüthrich



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Role of rotational motion in diffusion NMR experiments on supramolecular assemblies: application to Sup35NM fibrils
Role of rotational motion in diffusion NMR experiments on supramolecular assemblies: application to Sup35NM fibrils Pulsed-field gradient (PFG) NMR is an important tool for characterization of biomolecules and supramolecular assemblies. However, for micron-sized objects, such as amyloid fibrils, these experiments become difficult to interpret because in addition to translational diffusion they are also sensitive to rotational diffusion. We have constructed a mathematical theory describing the outcome of PFG NMR experiments on rod-like fibrils. To test its validity, we have studied the...
nmrlearner Journal club 0 04-24-2021 04:45 PM
[NMR paper] Role of rotational motion in diffusion NMR experiments on supramolecular assemblies: application to Sup35NM fibrils
Role of rotational motion in diffusion NMR experiments on supramolecular assemblies: application to Sup35NM fibrils Angewandte Chemie International Edition, Accepted Article. More...
nmrlearner Journal club 0 04-24-2021 04:45 PM
[NMR paper] Characterizing the Brownian Diffusion of Nanocolloids and Molecular Solutions: Diffusion Ordered NMR Spectroscopy versus Dynamic Light Scattering.
Characterizing the Brownian Diffusion of Nanocolloids and Molecular Solutions: Diffusion Ordered NMR Spectroscopy versus Dynamic Light Scattering. Related Articles Characterizing the Brownian Diffusion of Nanocolloids and Molecular Solutions: Diffusion Ordered NMR Spectroscopy versus Dynamic Light Scattering. J Phys Chem B. 2020 May 01;: Authors: Zhang C, Jin Z, Zeng B, Wang W, Palui G, Mattoussi H Abstract Hydrodynamic size is a characteristic dimension that reflects the Brownian diffusion of objects, such as proteins,...
nmrlearner Journal club 0 05-03-2020 02:46 PM
Structure determination of protein-ligand complexes by NMR in solution
Structure determination of protein-ligand complexes by NMR in solution Publication date: Available online 8 February 2018 Source:Methods</br> Author(s): Julien Orts, Alvar D. Gossert</br> In this paper, we discuss methods for determining structures of protein-ligand complexes by NMR in solution. Our discussion is based on small ligands (<2 kDa) as for example drugs, metabolites or oligo-peptides, but most of the considerations also apply to more general cases. In NMR in solution, the kinetics of association and dissociation of the complex – the exchange rate –...
nmrlearner Journal club 0 03-09-2018 09:52 AM
[NMR paper] Solution NMR Structure Determination of Polytopic ?-Helical Membrane Proteins: A Guide to Spin Label Paramagnetic Relaxation Enhancement Restraints.
Solution NMR Structure Determination of Polytopic ?-Helical Membrane Proteins: A Guide to Spin Label Paramagnetic Relaxation Enhancement Restraints. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Solution NMR Structure Determination of Polytopic ?-Helical Membrane Proteins: A Guide to Spin Label Paramagnetic Relaxation Enhancement Restraints. Methods Enzymol. 2015;557:329-348 Authors: Columbus L, Kroncke B Abstract Solution nuclear...
nmrlearner Journal club 0 05-08-2015 09:18 PM
Automated protein NMR structure determination in solution.
Automated protein NMR structure determination in solution. Automated protein NMR structure determination in solution. Methods Mol Biol. 2010;673:95-127 Authors: Gronwald W, Kalbitzer HR The main drawback of protein NMR spectroscopy today is still the extensive amount of time required for solving a single structure. The main bottleneck in this respect is the manual evaluation of the experimental spectra. A clear solution to this challenge is the development of automated methods for this purpose. At the current stage of development, this goal has...
nmrlearner Journal club 0 09-14-2010 02:03 PM
[NMR paper] Determination of local protein structure by spin label difference 2D NMR: the region
Determination of local protein structure by spin label difference 2D NMR: the region neighboring Asp61 of subunit c of the F1F0 ATP synthase. Related Articles Determination of local protein structure by spin label difference 2D NMR: the region neighboring Asp61 of subunit c of the F1F0 ATP synthase. Biochemistry. 1995 Feb 7;34(5):1635-45 Authors: Girvin ME, Fillingame RH Purified subunit c from the H(+)-transporting F1F0 ATP synthase of Escherichia coli folds as an antiparallel pair of extended helices in a solution of...
nmrlearner Journal club 0 08-22-2010 03:41 AM
[NMR paper] Protein structure determination in solution by NMR spectroscopy.
Protein structure determination in solution by NMR spectroscopy. Related Articles Protein structure determination in solution by NMR spectroscopy. J Biol Chem. 1990 Dec 25;265(36):22059-62 Authors: Wüthrich K The introduction of nuclear magnetic resonance (NMR) spectroscopy as a second method for protein structure determination at atomic resolution, in addition to x-ray diffraction in single crystals, has already led to a significant increase in the number of known protein structures. The NMR method provides data that are in many ways...
nmrlearner Journal club 0 08-21-2010 11:04 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2021, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:49 AM.


Map