[ASAP] Glycosylation Fosters Interactions between Model Sea Urchin Spicule Matrix Proteins. Implications for Embryonic Spiculogenesis and Biomineralization

		BioNMR > Educational resources > Journal club
[ASAP] Glycosylation Fosters Interactions between Model Sea Urchin Spicule Matrix Proteins. Implications for Embryonic Spiculogenesis and Biomineralization

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-18-2018, 04:15 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,175

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Glycosylation Fosters Interactions between Model Sea Urchin Spicule Matrix Proteins. Implications for Embryonic Spiculogenesis and Biomineralization

[ASAP] Glycosylation Fosters Interactions between Model Sea Urchin Spicule Matrix Proteins. Implications for Embryonic Spiculogenesis and Biomineralization

Biochemistry
DOI: 10.1021/acs.biochem.8b00207

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Strategy for Stabilization of CutA1 Proteins Due to Ion–Ion Interactions at Temperatures of over 100 °C Strategy for Stabilization of CutA1 Proteins Due to Ion–Ion Interactions at Temperatures of over 100 °C https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00103/20180418/images/medium/bi-2018-00103y_0005.gif Biochemistry DOI: 10.1021/acs.biochem.8b00103 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/RydMtktKULY More...	nmrlearner	Journal club	0	04-19-2018 01:51 AM
[ASAP] Selective Synergism Created by Interactive Nacre Framework-Associated Proteins Possessing EGF and vWA Motifs: Implications for Mollusk Shell Formation Selective Synergism Created by Interactive Nacre Framework-Associated Proteins Possessing EGF and vWA Motifs: Implications for Mollusk Shell Formation https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00119/20180412/images/medium/bi-2018-00119s_0008.gif Biochemistry DOI: 10.1021/acs.biochem.8b00119 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/JVtHyAjRZKs More...	nmrlearner	Journal club	0	04-13-2018 01:15 AM
[ASAP] Bacterial Model Membranes Reshape Fibrillation of a Functional Amyloid Protein Bacterial Model Membranes Reshape Fibrillation of a Functional Amyloid Protein https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00002/20180402/images/medium/bi-2018-00002f_0008.gif Biochemistry DOI: 10.1021/acs.biochem.8b00002 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/IKrC6FWKK6c More...	nmrlearner	Journal club	0	04-03-2018 05:04 AM
A Model Sea Urchin Spicule Matrix Protein, rSpSM50,Is a Hydrogelator That Modifies and Organizes the Mineralization Process A Model Sea Urchin Spicule Matrix Protein, rSpSM50,Is a Hydrogelator That Modifies and Organizes the Mineralization Process http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00083/20170511/images/medium/bi-2017-000833_0010.gif Biochemistry DOI: 10.1021/acs.biochem.7b00083 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/PrIE9Gh7UCw More...	nmrlearner	Journal club	0	05-12-2017 02:14 AM
A Model Sea Urchin Spicule Matrix Protein Self-AssociatesTo Form Mineral-Modifying Protein Hydrogels A Model Sea Urchin Spicule Matrix Protein Self-AssociatesTo Form Mineral-Modifying Protein Hydrogels http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00619/20160801/images/medium/bi-2016-00619e_0009.gif Biochemistry DOI: 10.1021/acs.biochem.6b00619 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/qvPYwJitCUE More...	nmrlearner	Journal club	0	08-01-2016 10:34 PM
Synergistic Biomineralization Phenomena Created bya Combinatorial Nacre Protein Model System Synergistic Biomineralization Phenomena Created bya Combinatorial Nacre Protein Model System http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00163/20160412/images/medium/bi-2016-00163m_0008.gif Biochemistry DOI: 10.1021/acs.biochem.6b00163 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/ymKh5Kh3glo More...	nmrlearner	Journal club	0	04-13-2016 10:23 PM
[NMR paper] Solid-State NMR Studies of Biomineralization Peptides and Proteins. Solid-State NMR Studies of Biomineralization Peptides and Proteins. Solid-State NMR Studies of Biomineralization Peptides and Proteins. Acc Chem Res. 2013 Aug 9; Authors: Roehrich A, Drobny G Abstract Nature has evolved sophisticated strategies for engineering hardtissues through the interaction of proteins, and ultimately cells, with inorganic mineral phases. This process, called biomineralization, is how living organisms transform inorganic materials such as hydroxyapatite, calcite, and silica into highly intricate and organized...	nmrlearner	Journal club	0	08-13-2013 04:26 PM
Interactions of gemini surfactants with two model proteins: NMR, CD, and fluorescence spectroscopies Interactions of gemini surfactants with two model proteins: NMR, CD, and fluorescence spectroscopies 1 March 2012 Publication year: 2012 Source:Journal of Colloid and Interface Science, Volume 369, Issue 1</br> </br> Gemini surfactants have two polar head groups and two hydrocarbon tails. Compared with conventional surfactants, geminis have much lower (?M vs. mM) critical micelle concentrations and possess slower (ms vs. ?s) monomer ? micelle kinetics. The structure of the gemini surfactants studied is ·2Br- where s =4, 5, or 6. Our objective is to reveal the effect...	nmrlearner	Journal club	0	02-03-2013 10:13 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off