BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 06-13-2018, 05:09 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,137
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default [ASAP] Comparative Analysis of the Conformation, Aggregation, Interaction, and Fibril Morphologies of Human a-, ß-, and ?-Synuclein Proteins

[ASAP] Comparative Analysis of the Conformation, Aggregation, Interaction, and Fibril Morphologies of Human a-, ß-, and ?-Synuclein Proteins



Biochemistry
DOI: 10.1021/acs.biochem.8b00343



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Solid-state NMR structure of a pathogenic fibril of full-length human ?-synuclein.
Solid-state NMR structure of a pathogenic fibril of full-length human ?-synuclein. Related Articles Solid-state NMR structure of a pathogenic fibril of full-length human ?-synuclein. Nat Struct Mol Biol. 2016 Mar 28; Authors: Tuttle MD, Comellas G, Nieuwkoop AJ, Covell DJ, Berthold DA, Kloepper KD, Courtney JM, Kim JK, Barclay AM, Kendall A, Wan W, Stubbs G, Schwieters CD, Lee VM, George JM, Rienstra CM Abstract Misfolded ?-synuclein amyloid fibrils are the principal components of Lewy bodies and neurites, hallmarks of...
nmrlearner Journal club 0 03-29-2016 04:59 PM
[NMR paper] Comparative analysis the binding affinity of mycophenolic sodium and meprednisone with human serum albumin: insight by NMR relaxation data and docking simulation.
Comparative analysis the binding affinity of mycophenolic sodium and meprednisone with human serum albumin: insight by NMR relaxation data and docking simulation. Related Articles Comparative analysis the binding affinity of mycophenolic sodium and meprednisone with human serum albumin: insight by NMR relaxation data and docking simulation. Chem Biol Interact. 2016 Feb 15; Authors: Ma X, He J, Yan J, Wang Q, Li H Abstract Mycophenolic sodium is an immunosuppressive agent that is always combined administration with corticosteroid...
nmrlearner Journal club 0 02-20-2016 11:05 PM
[NMR paper] Mechanistic Insight into the Relationship between N-Terminal Acetylation of ?-Synuclein and Fibril Formation Rates by NMR and Fluorescence.
Mechanistic Insight into the Relationship between N-Terminal Acetylation of ?-Synuclein and Fibril Formation Rates by NMR and Fluorescence. Mechanistic Insight into the Relationship between N-Terminal Acetylation of ?-Synuclein and Fibril Formation Rates by NMR and Fluorescence. PLoS One. 2013;8(9):e75018 Authors: Kang L, Janowska MK, Moriarty GM, Baum J Abstract Aggregation of ?-synuclein (?Syn), the primary protein component in Lewy body inclusions of patients with Parkinson's disease, arises when the normally soluble intrinsically...
nmrlearner Journal club 0 09-24-2013 10:18 AM
Structures Behind the Amyloid Aggregation of ?-Synuclein: An NMR Based Approach.
Structures Behind the Amyloid Aggregation of ?-Synuclein: An NMR Based Approach. Structures Behind the Amyloid Aggregation of ?-Synuclein: An NMR Based Approach. Curr Protein Pept Sci. 2011 Feb 24; Authors: Orcellet ML, Fernández CO The misfolding of proteins into a toxic conformation is proposed to be at the molecular foundation of a number of neurodegenerative disorders including Alzheimer's and Parkinson's diseases. Evidence that ?-synuclein amyloidogenesis plays a causative role in the development of Parkinson's disease is furnished by a...
nmrlearner Journal club 0 02-26-2011 11:56 AM
Probing the micelle-bound aggregation-prone state of ?-synuclein with (19)F NMR spectroscopy.
Probing the micelle-bound aggregation-prone state of ?-synuclein with (19)F NMR spectroscopy. Probing the micelle-bound aggregation-prone state of ?-synuclein with (19)F NMR spectroscopy. Chembiochem. 2010 Sep 24;11(14):1993-6 Authors: Wang GF, Li C, Pielak GJ
nmrlearner Journal club 0 01-21-2011 01:22 AM
[NMR paper] Molecular dynamics-derived conformation and intramolecular interaction analysis of th
Molecular dynamics-derived conformation and intramolecular interaction analysis of the N-acetyl-9-O-acetylneuraminic acid-containing ganglioside GD1a and NMR-based analysis of its binding to a human polyclonal immunoglobulin G fraction with selectivity for O-acetylated sialic acids. Related Articles Molecular dynamics-derived conformation and intramolecular interaction analysis of the N-acetyl-9-O-acetylneuraminic acid-containing ganglioside GD1a and NMR-based analysis of its binding to a human polyclonal immunoglobulin G fraction with selectivity for O-acetylated sialic acids. ...
nmrlearner Journal club 0 08-22-2010 02:20 PM
[NMR paper] NMR spectroscopic analysis of the DNA conformation induced by the human testis determ
NMR spectroscopic analysis of the DNA conformation induced by the human testis determining factor SRY. Related Articles NMR spectroscopic analysis of the DNA conformation induced by the human testis determining factor SRY. Biochemistry. 1995 Sep 19;34(37):11998-2004 Authors: Werner MH, Bianchi ME, Gronenborn AM, Clore GM The conformation of an eight base pair DNA oligonucleotide duplex bound to the human testis determining factor SRY and the orientation of the protein domain within the complex have been analyzed by a variety of NMR methods...
nmrlearner Journal club 0 08-22-2010 03:50 AM
[NMR paper] Comparative studies of the interaction of human and bovine platelet factor 4 with hep
Comparative studies of the interaction of human and bovine platelet factor 4 with heparin using histidine NMR resonances as spectroscopic probes. Related Articles Comparative studies of the interaction of human and bovine platelet factor 4 with heparin using histidine NMR resonances as spectroscopic probes. J Protein Chem. 1993 Jun;12(3):303-9 Authors: Talpas CJ, Lee L The pKa values of His-38 and His-50 of the heparin-binding protein, bovine platelet factor 4, are 5.6 and 6.5, respectively, as determined by 1H NMR spectroscopy. The 1H NMR...
nmrlearner Journal club 0 08-21-2010 11:53 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:49 PM.


Map