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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 08-07-2012, 05:55 PM
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Default Postdoc NMRFAM

Postdoc NMRFAM

The National Magnetic Resonance Facility at Madison (NMRFAM) has immediate openings for two postdoctoral research associates. Please visit the NMRFAM website www.nmrfam.wisc.edu for information about our instrumentation and research programs. (1) Structure determination by hybrid methods (NMR, SAXS, computation) The ideal candidate will be a recent PhD with experience in solution structure determination making use of data from NMR spectroscopy and small angle X-ray scattering (SAXS). This position will work with NMRFAM staff members developing technology and applying it to collaborative projects. (2) Metabolomics by NMR and MS The ideal candidate will have had extensive experience in LC-MS and NMR spectroscopy with applications to metabolomics. This position will develop technology and work on projects initiated by biomedical collaborators. Salary will be commensurate with the candidate's qualifications and experience at least at the NIH rate (http://grants.nih.gov/grants/guide/n...OD-12-033.html). Applicants should send a cover letter (including the names and e-mail addresses of three mentors willing to provide letters of recommendation) and curriculum vitae to: Prof. John Markley NMRFAM Biochemistry Department University of Wisconsin-Madison 433 Babcock Drive Madison WI 53706 USA jmarkley@wisc.edu[IMG]https://bl...s.blogspot.com[/IMG]


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