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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 08-21-2010, 05:17 AM
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Default postdoctoral position in London

postdoctoral position in London

Postdoctoral Research Position is available in Annalisa Pastore's group at
the Molecular Division of the National Institute for Medical Research,
Mill Hill, London

We are seeking an experienced and highly motivated postdoctoral fellow
with a solid background in Structural Biology. The position is funded by a
EU grant (EFACTS) and is offered for three years, with possibility for an
extension up to 11 additional months.

Research project: The successful candidate will work on a project
focusing on understanding the primary function of frataxin, the protein
responsible for Friedreich's ataxia. The project requires collaborative
effords and the use of a wide range of structural, computational and
spectroscopic as well as molecular biological techniques and attempts to
reach an improved understanding of the role of frataxin in iron-sulfur
cluster biogenesis and in disease. The primary responsibility of the
successful applicant will be the investigation of the interactions between
frataxin and components of the iron-sulfur cluster machinery.

Required qualifications: The successful candidate should hold a Ph.D. in
chemistry/biochemistry/biophysics or a related field and have complete
her/his thesis defense by July, 2010. Experience with protein NMR
spectroscopy and/or crystallography is a requirement. The applicant must
have already solved structures of proteins and published at least one
first-author manuscript describing the atomic structure of a protein or a
protein-ligand complex. Knowledge of enzymology is considered a merit.
Good publication record, fluency in English, high motivation and excellent
social competence as well as ability to learn new techniques are expected.
Experience in molecular biology and computation chemistry will be
beneficial.

Expected Starting date: September-October 2010.

For additional information please contact: Annalisa Pastore
(+44-20-88162630; apastor@nimr.mrc.ac.uk)

Application: The application should be submitted to the NIMR website. It
should include: (1) cover letter, in which the applicant describes his/her
research interests as well as his/her career vision, a (2) Curriculum
Vitae, a (3) list of publications, a (4) copy of official Ph.D.
transcript, and (5) the full contact addresses of two references.
Application deadline: July 5, 2010.


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