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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Default postdoctoral position Amherst

postdoctoral position Amherst

An NIH-funded postdoctoral position is available immediately to join a project investigating the mechanism of transmembrane signaling in bacterial chemotaxis receptors.

The successful applicant will apply solid-state NMR, combined with other biophysical, biochemical, and molecular biology approaches, to membrane-bound signaling arrays of bacterial chemotaxis proteins (eg Fowler, D. J.; Weis, R. M.; Thompson, L. K. Biochemistry 2010, 49, 1425. http://pubs.acs.org/doi/abs/10.1021/bi901565k).

Individuals with a PhD, relevant experience in NMR and other biophysical/biochemical studies, and strong interest in membrane proteins should email a CV and 3 letters of recommendation to Prof. Lynmarie K. Thompson, thompson@chem.umass.edu.


Lynmarie K Thompson, PhD
Associate Professor
Department of Chemistry, 701 LGRT
University of Massachusetts
710 North Pleasant St.
Amherst, MA 01003-9336

Voice: 413-545-0827
FAX: 413-545-4490
E-Mail: thompson@chem.umass.edu
http://people.chem.umass.edu/thompson/

Director, Chemistry Biology Interface Training Program
http://www.umass.edu/cbi/

Chemistry: http://www.chem.umass.edu/
Molecular and Cellular Biology: http://www.bio.umass.edu/mcb/


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