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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 02-08-2011, 08:16 PM
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Default Postdoc Oxford

Postdoc Oxford

UNIVERSITY OF OXFORD
Department of Chemistry
Physical and Theoretical Chemistry Laboratory
Postdoctoral Research Assistant - NMR of photoactive proteins
Grade 07S : Salary £28,983 - £35,646 p.a.
Post Ref. DN11001/PJH

Applications are invited for a postdoctoral research assistant to work with Professor Peter Hore on a research project funded by DARPA (http://www.darpa.mil/). The post is available initially for up to 18 months, with a possible total duration of up to three years.

This position is part of a large project entitled Quantum Effects in Magnetoreception funded by the Defense Advanced Research Projects Agency as part of the programme Quantum Effects in Biological Environments (QuBE). The broad aims of the project are: (a) to design and perform a set of experiments that will determine definitively whether manifestly quantum effects are exploited in the avian magnetic compass sensor; (b) to develop the existing quantum mechanical model of magnetic effects on radical pair reactions; (c) to design and construct a proof-of-principle magnetic sensor around the reactions of radical pairs in model compounds. A central part of the project will involve optical and magnetic resonance experiments on the photo-active proteins photolyase and cryptochrome to establish their suitability as chemical sensors of weak magnetic fields.

The applicant should ideally have experience of protein NMR spectroscopy. The successful candidate will have the opportunity to work with colleagues from a range of disciplines on projects at the chemical/physical/life sciences interface.

The Hore group is located in the Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ (www.chem.ox.ac.uk). To find out more about the group’s research, please visit http://research.chem.ox.ac.uk/peter-hore.aspx.

Applicants should either already have a PhD in a relevant subject area, or have submitted their thesis prior to taking up the post.

For further particulars of the post, including how to apply, please visit our website http://www.chem.ox.ac.uk/jobs.asp. These should be downloaded before an application is made. Informal enquiries should be addressed to peter.hore@chem.ox.ac.uk who would be pleased to supply further information about the project. Please quote reference DN11001/PJH in all correspondence.

The closing date for applications is 28 February 2011.
-----------------------------------------------------------------------
P J Hore
Department of Chemistry, University of Oxford
Physical and Theoretical Chemistry Laboratory
South Parks Road, Oxford OX1 3QZ, UK

Tel: +44 (0)1865 275415 Fax: +44 (0)1865 275410

Email: peter.hore@chem.ox.ac.uk
Website: http://hore.chem.ox.ac.uk/
-----------------------------------------------------------------------


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