BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR career > Job marketplace
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 10-07-2014, 06:11 AM
ivanhoe.leung's Avatar
Junior Member
 
Join Date: Mar 2013
Location: Auckland, New Zealand
Posts: 3
Points: 54, Level: 1
Points: 54, Level: 1 Points: 54, Level: 1 Points: 54, Level: 1
Level up: 8%, 46 Points needed
Level up: 8% Level up: 8% Level up: 8%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
NMR Credits: 32
NMR Points: 54
Downloads: 0
Uploads: 0
Smile PhD Studentship in NMR Spectroscopy and Chemical Biology

PhD Studentship in NMR Spectroscopy and Chemical Biology: School of Chemical Sciences, The University of Auckland, New Zealand

We currently have one fully funded three-year PhD studentship available, which covers tuition fees and a stipend of NZ$ 25,000 p.a. to start at any time in 2015, although preferably in the first half of 2015.

We apply solution-state NMR spectroscopy to study protein-ligand interactions, enzymology, enzyme inhibition, protein structures and protein dynamics. A particular focus is on proteins that are involved in translation, and the enzymes that modify these proteins. The techniques that we apply include both "ligand-observed" and "protein-observed" NMR. The project does not involve synthetic chemistry, detailed physical theory or programming. It offers the opportunity to learn about research at the interface between chemistry and biology, and receive training in molecular biology, enzymology and NMR spectroscopy.

For more details, please see

Dr Ivanhoe Leung - The University of Auckland

We encourage applicants with an interest in NMR spectroscopy and chemical biology to make informal contact by email. Applications are accepted from both New Zealand and Overseas and there is no restrictions on nationality. Applicants should have, or expect to obtain, a good honours degree (at least 2.1) or equivalent in Chemistry, Biochemistry or a related discipline. To apply, please send an email/letter together with your curriculum vitae, and the names and email addresses of two referees to i.leung@auckland.ac.nz or by post to Dr Ivanhoe Leung, School of Chemical Sciences, The University of Auckland, Private Bag 92019, Auckland 1142, New Zealand.

Deadline: 05 December 2014

Last edited by ivanhoe.leung; 10-07-2014 at 06:31 AM.
Reply With Quote


Did you find this post helpful? Yes | No

  #2  
Unread 01-08-2015, 05:30 AM
ivanhoe.leung's Avatar
Junior Member
 
Join Date: Mar 2013
Location: Auckland, New Zealand
Posts: 3
Points: 54, Level: 1
Points: 54, Level: 1 Points: 54, Level: 1 Points: 54, Level: 1
Level up: 8%, 46 Points needed
Level up: 8% Level up: 8% Level up: 8%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
NMR Credits: 32
NMR Points: 54
Downloads: 0
Uploads: 0
Default

Please note: the application deadline for this studentship has now passed.

However, if you have a high GPA, you may be eligible for the University of Auckland Doctoral Scholarship. If you are interested in such an opportunity, please make informal contact with me by email.

Best regards,

Dr Ivanhoe Leung

8 January 2015
Reply With Quote


Did you find this post helpful? Yes | No
Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Equilibrium simulations with NMR chemical shifts [Biophysics and Computational Biology]
Equilibrium simulations with NMR chemical shifts Boomsma, W., Tian, P., Frellsen, J., Ferkinghoff-Borg, J., Hamelryck, T., Lindorff-Larsen, K., Vendruscolo, M.... Date: 2014-09-23 Methods of protein structure determination based on NMR chemical shifts are becoming increasingly common. The most widely used approaches adopt the molecular fragment replacement strategy, in which structural fragments are repeatedly reassembled into different complete conformations in molecular simulations. Although these approaches are effective in generating individual structures consistent with... Read...
nmrlearner Journal club 0 09-24-2014 06:03 AM
[NMR900 blog] NMR paper in Nature Chemical Biology
NMR paper in Nature Chemical Biology M.J. Smith, M. Ikura, "Integrated RAS signaling defined by parallel NMR detection of effectors and regulators," Nature Chemical Biology (2014) online. http://dx.doi.org/10.1038/nchembio.1435 Read complete story on NMR900 blog
nmrlearner News from NMR blogs 0 01-21-2014 11:10 PM
Ultrahigh resolution protein structures using NMR chemical shift tensors [Biophysics and Computational Biology]
Ultrahigh resolution protein structures using NMR chemical shift tensors Wylie, B. J., Sperling, L. J., Nieuwkoop, A. J., Franks, W. T., Oldfield, E., Rienstra, C. M.... Date: 2011-10-11 NMR chemical shift tensors (CSTs) in proteins, as well as their orientations, represent an important new restraint class for protein structure refinement and determination. Here, we present the first determination of both CST magnitudes and orientations for 13C? and 15N (peptide backbone) groups in a protein, the ?1 IgG binding domain of protein G from Streptococcus spp., GB1. Site-specific 13C? and...
nmrlearner Journal club 0 10-12-2011 06:37 AM
Mapping allostery through the covariance analysis of NMR chemical shifts [Biophysics and Computational Biology]
Mapping allostery through the covariance analysis of NMR chemical shifts Selvaratnam, R., Chowdhury, S., VanSchouwen, B., Melacini, G.... Date: 2011-04-12 Allostery is a fundamental mechanism of regulation in biology. The residues at the end points of long-range allosteric perturbations are commonly identified by the comparative analyses of structures and dynamics in apo and effector-bound states. However, the networks of interactions mediating the propagation of allosteric signals between the end points often remain elusive. Here we show that the covariance analysis of NMR chemical...
nmrlearner Journal club 0 04-13-2011 01:15 AM
Hot Topics in Chemical Biology and Drug Development - Newswise (press release)
<img alt="" height="1" width="1" /> Hot Topics in Chemical Biology and Drug Development Newswise (press release) â??The high-resolution protein structures that you see on Wikipedia have been obtained by X-ray crystallography and nuclear magnetic resonance -- and these are important reference points for understanding proteins in biology,â?? explains Michael L. Gross. ... and more &raquo; Hot Topics in Chemical Biology and Drug Development - Newswise (press release) More...
nmrlearner Online News 0 04-07-2011 11:40 PM
[NMR paper] New applications of paramagnetic NMR in chemical biology.
New applications of paramagnetic NMR in chemical biology. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles New applications of paramagnetic NMR in chemical biology. Curr Opin Chem Biol. 1999 Apr;3(2):145-51 Authors: Bertini I, Luchinat C The methodological accessibility to solution structure and dynamic investigation of paramagnetic metallobiomolecules has afforded the ability to tackle the redox pairs of electron transfer proteins of which at least one is paramagnetic,...
nmrlearner Journal club 0 08-21-2010 04:03 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:21 AM.


Map