EU-funded PhD opportunity, Strasbourg, France

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EU-funded PhD opportunity, Strasbourg, France

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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01-26-2012, 12:10 AM

nmrlearner

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EU-funded PhD opportunity, Strasbourg, France

EU-funded PhD opportunity, Strasbourg, France

NMRTEC is opening a position for a doctoral thesis in the field of analytical chemistry dedicated to complex system and combinatorial chemistry.In a part of the ITN READ European network, it is intended to conduct an extensive study on the development of analytical methods for the analysis of complex mixtures. This will include the study of large chemical libraries, auto-assembling systems, complex protein ligand interactions, and the study of polymers and disordered biological systems. Methods developed will include mostly NMR (1D, 2D, and multinuclear), diffusion measurement by NMR (DOSY) but also other techniques such as SAXS and mass spectrometry.This is a joined PhD project between NMRTEC and the biomolecular NMR academic laboratory (IGBMC, Dr. Marc André Delsuc).A successful candidate should have strong interest specifically in NMR but also in analytical and spectroscopic techniques. A good knowledge in biological and pharmaceutical sciences is an advantage.According to EU rules for ITN projects the applicant:- has less than 4 years of experience since gaining a university degree and has not been awarded a doctoral degree;- shall not be a national of the State in which the hosting partner's research team is located (France);- must have resided in the France for no more than 12 months during the past 3 years.

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