BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > General
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 09-30-2011, 08:01 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 17,586
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default ROSETTA manual

ROSETTA manual

Manual for ROSETTA 3.1

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[BMNRC community] CS-ROSETTA: System for chemical shifts based protein structure prediction using ROSETTA
CS-ROSETTA: System for chemical shifts based protein structure prediction using ROSETTA http://spin.niddk.nih.gov/bax/ http://condor.bmrb.wisc.edu/bbee/rosetta/  
nmrlearner News from other NMR forums 0 07-12-2011 08:26 PM
[Question from NMRWiki Q&A forum] cs23d vs. cs-rosetta
cs23d vs. cs-rosetta Does anybody have any thoughts on this ? I dont really know which is better, CS23D or CS-ROSETTA. Clearly they are identical in terms of I/O..... but Im not sure wether one is considered "superior" to the other . In summary, my experience with the online servers for these programs is somewhat limited. Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 01-05-2011 11:40 PM
[KPWU blog] Test reports of CS-Rosetta (3.1)
Test reports of CS-Rosetta (3.1) On Dec 23rd, I successfully install Rosetta 3.1 and CS-Rosetta on my iMac and run the test using GB3 protein which was provided within the CS-Rosetta. Here are the rough steps I used to get a simulated GB3 protein. run “runCSRjob3.com” as instructed in the online manual The RunRosetta3.com has to be modified first to http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=236&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 12-28-2010 05:27 AM
[KPWU blog] Install Rosetta-3.1 and CS-Rosetta on Mac OS 10.6
Install Rosetta-3.1 and CS-Rosetta on Mac OS 10.6 A note of my installation in the last 3 days. Machine: iMac 3.06 GHz, core i3, 4 GB Ram , OS 10.6.4 Part A –Rosetta 3.1 First download Rosetta 3.1, all the bundle stuff. –uncompress the bundle file, and keep uncompress the all .tgz files Then download corrections for rosetta_source at here: http://zinc.ucsf.edu/~colin/snow_leopard_tools.tar.gz (see this http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=227&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 12-24-2010 03:24 PM
[NMRpipe Yahoo group] Re: Is there still an nmrpipe manual?
Re: Is there still an nmrpipe manual? These pages might be useful: lists of processing options: http://www.nmrscience.com/ref/nmrpipe/ list of programs: http://www.nmrscience.com/ref/prog/ list of More...
NMRpipe Yahoo group news News from other NMR forums 0 10-26-2010 08:48 PM
[NMRpipe Yahoo group] Is there still an nmrpipe manual?
Is there still an nmrpipe manual? Years ago I remember referring to an alphabetical (hard copy) command reference when I wanted clarification of some aspect of pipe processing. Does such still More...
NMRpipe Yahoo group news News from other NMR forums 0 10-26-2010 08:48 PM
Sparky Manual
Sparky Manual slice sparky More...
nmrlearner NMR bookmarks 0 08-19-2010 02:34 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2017, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 03:42 AM.


Map