Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids
Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids
Abstract Unravelling the complex correlation between chemical shifts of 13 C α, 13 C β, 13 C�, 1 H α, 15 N, 1 H N atoms in amino acids of proteins from NMR experiment and local structural environments of amino acids facilitates the assignment of secondary structures of proteins. This is an important impetus for both determining the three-dimensional structure and understanding the biological function of proteins. The previous...
[NMR paper] High-throughput construction method for expression vector of peptides for NMR study s
High-throughput construction method for expression vector of peptides for NMR study suited for isotopic labeling.
Related Articles High-throughput construction method for expression vector of peptides for NMR study suited for isotopic labeling.
Protein Eng Des Sel. 2004 Apr;17(4):305-14
Authors: Tenno T, Goda N, Tateishi Y, Tochio H, Mishima M, Hayashi H, Shirakawa M, Hiroaki H
Fusion protein constructs for labeled peptides were generated with the 114 amino acid thioredoxin (TRX), coupled with the incorporation of a histidine tag for affinity...
nmrlearner
Journal club
0
11-24-2010 09:51 PM
[NMR paper] An expectation/maximization nuclear vector replacement algorithm for automated NMR re
An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.
Related Articles An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.
J Biomol NMR. 2004 Jun;29(2):111-38
Authors: Langmead CJ, Donald BR
We report an automated procedure for high-throughput NMR resonance assignment for a protein of known structure, or of an homologous structure. Our algorithm performs Nuclear Vector Replacement (NVR) by Expectation/Maximization (EM) to compute...
nmrlearner
Journal club
0
11-24-2010 09:51 PM
[NMR paper] A polynomial-time nuclear vector replacement algorithm for automated NMR resonance as
A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
Related Articles A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
J Comput Biol. 2004;11(2-3):277-98
Authors: Langmead CJ, Yan A, Lilien R, Wang L, Donald BR
High-throughput NMR structural biology can play an important role in structural genomics. We report an automated procedure for high-throughput NMR resonance assignment for a protein of known structure, or of a homologous structure. These...
nmrlearner
Journal club
0
11-24-2010 09:25 PM
[NMR paper] Contributions to protein entropy and heat capacity from bond vector motions measured
Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation.
J Mol Biol. 1997 Oct 10;272(5):790-804
Authors: Yang D, Mok YK, Forman-Kay JD, Farrow NA, Kay LE
The backbone dynamics of both folded and unfolded states of staphylococcal nuclease (SNase) and the N-terminal...
nmrlearner
Journal club
0
08-22-2010 05:08 PM
[NMR paper] Contributions to conformational entropy arising from bond vector fluctuations measure
Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding.
J Mol Biol. 1996 Oct 25;263(2):369-82
Authors: Yang D, Kay LE
The relation between order parameters derived from NMR...
nmrlearner
Journal club
0
08-22-2010 02:20 PM
De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media
De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media
Ke Ruan, Kathryn B. Briggman and Joel R. Tolman
Journal of Biomolecular NMR; 2008; 41(2) pp 61 - 76
Abstract:
The straightforward interpretation of solution state residual dipolar couplings (RDCs) in terms of internuclear vector orientations generally requires prior knowledge of the alignment tensor, which in turn is normally estimated using a structural model. We have developed a protocol which allows the requirement for prior structural knowledge to...
Vector Database
Linear Mode
