PDBe Vivaldi is a tool to interactively present information about the homogeneity of the modeled NMR ensemble, validation of experimental chemical shifts, residual dipolar coupling (RDC) and distance restraints and validation scores based on empirical knowledge and databases. It focuses on bringing together many aspects of NMR structure validation and on facilitating the visual assessment of the quality of the modeled NMR structure ensemble. The interactive wizard, manual and frequently asked question sections provide an easy entry point to validation of NMR ensembles for the NMR non-expert users. Further efforts will be made to maintain, improve and extend PDBe Vivaldi to become the standard access portal for NMR structure validation.
[KPWU blog] [PyMOL] customized display of helices and strands
customized display of helices and strands
The *default view of cartoon presentation in PyMOL is provided below. PyMOL provides commands “cartoon_oval_length“, “cartoon_oval_width“, “cartoon_rect_length” and “cartoon_rect_width” to customize the display of helices and strands. PyMOL users should be aware that the 4 commands can’t be combined with “cartoon_fancy_helices” and “cartoon_fancy_strands”. *Once the fancy mode is turned on, the manually customized width/length will http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=539&subd=kpwu&ref=&feed=1
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nmrlearner
News from NMR blogs
0
10-05-2011 08:57 PM
[CNS Yahoo group] NMR resources at PDBe (pdbe.org/nmr)
NMR resources at PDBe (pdbe.org/nmr)
Hi all, The Protein Data Bank in Europe (PDBe; http://pdbe.org/) continues to improve its services to the scientific community. As part of our recent website
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nmrlearner
News from other NMR forums
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07-14-2011 08:55 PM
[Question from NMRWiki Q&A forum] Problems about VnmrJ 2.3A(3. fid display style)
Problems about VnmrJ 2.3A(3. fid display style)
How can I change the line style of the spectrum or fid in viewports? The line of spectrum seems too narrow.
Check if somebody has answered this question on NMRWiki QA forum
nmrlearner
News from other NMR forums
0
02-27-2011 01:30 PM
[NMR paper] Redesign of a four-helix bundle protein by phage display coupled with proteolysis and
Redesign of a four-helix bundle protein by phage display coupled with proteolysis and structural characterization by NMR and X-ray crystallography.
Related Articles Redesign of a four-helix bundle protein by phage display coupled with proteolysis and structural characterization by NMR and X-ray crystallography.
J Mol Biol. 2002 Oct 18;323(2):253-62
Authors: Chu R, Takei J, Knowlton JR, Andrykovitch M, Pei W, Kajava AV, Steinbach PJ, Ji X, Bai Y
To test whether it is practical to use phage display coupled with proteolysis for protein design, we...
nmrlearner
Journal club
0
11-24-2010 08:58 PM
to display the NMR signal.
http://hyperphysics.phy-astr.gsu.edu/hbase/nuclear/imgnuc/nmr3.gif
hyperphysics.phy-astr.gsu.edu
1/11/2010 8:46:06 AM GMT
to display the NMR signal.
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nmrlearner
NMR pictures
0
11-01-2010 08:53 AM
to display the NMR signal.
http://hyperphysics.phy-astr.gsu.edu/hbase/nuclear/imgnuc/nmr3.gif
hyperphysics.phy-astr.gsu.edu
1/11/2010 8:46:06 AM GMT
to display the NMR signal.
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nmrlearner
NMR pictures
0
11-01-2010 08:53 AM
[CNS Yahoo group] Introducing the PDBe Wizard - finding "stuff" on the PDBe website
Introducing the PDBe Wizard - finding "stuff" on the PDBe website
As part of the recent Midsummer Make-over of the Protein Data Bank in Europe website (PDBe; http://pdbe.org/), we introduced a new Wizard tool. The purpose of
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PDBe Vivaldi: Visualisation and Validation Display for NMR
Linear Mode
