BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > General
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-01-2016, 10:03 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,135
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Journal Highlight: NMR spectroscopy of filtered serum of prostate cancer: A new frontier in metabolomics

Journal Highlight: NMR spectroscopy of filtered serum of prostate cancer: A new frontier in metabolomics

The application of 1H NMR spectroscopy of 52 serum metabolites as a surrogate tactic for probing and predicting prostate cancer and benign prostatic hyperplasia is on a par with LC/MS and histopathological examination.

Read the rest at Spectroscopynow.com
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Journal Highlight: Quantitative online NMR spectroscopy in a nutshell
Journal Highlight: Quantitative online NMR spectroscopy in a nutshell http://www.spectroscopynow.com/common/images/thumbnails/155a67a8bff.jpgThis paper compiles the most important aspects of quantitative process NMR spectroscopy in complex multicomponent mixtures and provides examples. Read the rest at Spectroscopynow.com
nmrlearner General 0 07-04-2016 10:42 AM
[NMR paper] (1)H NMR-Derived Metabolomics of Filtered Serum of Myocardial Ischemia in Unstable Angina Patients.
(1)H NMR-Derived Metabolomics of Filtered Serum of Myocardial Ischemia in Unstable Angina Patients. (1)H NMR-Derived Metabolomics of Filtered Serum of Myocardial Ischemia in Unstable Angina Patients. Clin Chim Acta. 2016 Feb 26; Authors: Ameta K, Gupta A, Ameta D, Sethi R, Kumar D, Ahmad I, Mahdi AA Abstract BACKGROUND: Despite continuing research for development of accurate biomarkers of myocardial ischemia in unstable angina, lack of biochemical biomarkers is alarming. We sought to develop accurate biomarkers using high...
nmrlearner Journal club 0 03-02-2016 07:20 PM
Metabolic imaging of patients with prostate cancer using hyperpolarized [1-(1)(3)C]pyruvate
From The DNP-NMR Blog: Metabolic imaging of patients with prostate cancer using hyperpolarized pyruvate Nelson, S.J., et al., Metabolic imaging of patients with prostate cancer using hyperpolarized pyruvate. Sci Transl Med, 2013. 5(198): p. 198ra108. http://www.ncbi.nlm.nih.gov/pubmed/23946197
nmrlearner News from NMR blogs 0 12-29-2015 02:29 AM
Journal Highlight: Fertility-associated metabolites in bull seminal plasma and blood serum: 1H NMR analysis
Journal Highlight: Fertility-associated metabolites in bull seminal plasma and blood serum: 1H NMR analysis http://www.spectroscopynow.com/common/images/thumbnails/14bd568ab8a.jpgA proof-of-principle study has been carried out to identify fertility-associated metabolites in dairy bull seminal plasma and blood serum using proton NMR spectroscopy. Read the rest at Spectroscopynow.com
nmrlearner General 0 03-02-2015 04:03 PM
Journal Highlight: Examination of amber and related materials by NMR spectroscopy
Journal Highlight: Examination of amber and related materials by NMR spectroscopy http://www.spectroscopynow.com/common/images/thumbnails/14aaaa23abe.jpgThe solid-state 13C and solution 1H NMR spectra of fossilized resins (ambers) has generated five groupings of materials based on spectral characteristics. Read the rest at Spectroscopynow.com
nmrlearner General 0 01-03-2015 12:53 PM
Journal Highlight: Aqueous and lipid nuclear magnetic resonance metabolomic profiles of the earthworm Aporrectodea caliginosa show potential as an indicator species for environmental metabolomics
Journal Highlight: Aqueous and lipid nuclear magnetic resonance metabolomic profiles of the earthworm Aporrectodea caliginosa show potential as an indicator species for environmental metabolomics http://www.spectroscopynow.com/common/images/thumbnails/149809b1b4d.jpgThe aqueous and lipid metabolites in Aporrectodea caliginosa have been examined using high-resolution 1- and 2-dimensional nuclear magnetic resonance spectroscopy, allowing worms from different sites to be distinguished. Read the rest at Spectroscopynow.com
nmrlearner General 0 11-06-2014 08:42 AM
Journal Highlight: Investigation of the chemomarkers correlated with flower colour in different organs of Catharanthus roseus using NMR-based metabolomics
Journal Highlight: Investigation of the chemomarkers correlated with flower colour in different organs of Catharanthus roseus using NMR-based metabolomics http://www.spectroscopynow.com/common/images/thumbnails/14358e552d8.jpgThe metabolic profile of leaves, stems, roots and flowers of Catharanthus roseus and the possible correlation with four flower colours (orange, pink, purple and red) was studied by 1H-NMR spectroscopy. Read the rest at Spectroscopynow.com
nmrlearner General 0 01-06-2014 08:50 PM
Journal Highlight: Combined use of filtered and edited 1H NMR spectroscopy to detect 13C-enriched compounds in complex mixtures
Journal Highlight: Combined use of filtered and edited 1H NMR spectroscopy to detect 13C-enriched compounds in complex mixtures http://www.spectroscopynow.com/common/images/thumbnails/13b5c5e9785.jpgThe 13C background signal can be distinguished from resonances of 13C-enriched xenobiotics by the absence of a 12C component, detected by combined analysis of 13C-filtered and -edited proton NMR spectra.  Source: Spectroscopynow.com
nmrlearner General 0 02-03-2013 08:49 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 09:08 PM.


Map