BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > General
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 01-04-2011, 11:03 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 17,586
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Elevating Oxygen

Elevating Oxygen

Spectroscopy: Technique yields unprecedented resolution in 17O NMR spectra of proteins in solution

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] paramagnetic oxygen in solution NMR
paramagnetic oxygen in solution NMR A student is running a kinetics experiment in a J-Young tube under 5-10 atm of oxygen, much like in this journal article:http://pubs.acs.org/doi/abs/10.1021/ja9061932 Student is seeing reduction in signal from his compound (slightly polar) and his internal standard (non-polar). Obviously paramagnetic oxygen? The part I can't figure out: student is NOT seeing a reduction in his solvent peak. Solvent is benzene or toluene. I am assuming he is using at least some deuterated solvent. I have found a lot of literature on the interaction of paramagnetic...
nmrlearner News from other NMR forums 0 06-03-2011 12:11 AM
In vivo oxygen-17 NMR for imaging brain oxygen metabolism at high field
In vivo oxygen-17 NMR for imaging brain oxygen metabolism at high field Publication year: 2011 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 23 April 2011</br> Xiao-Hong, Zhu , Wei, Chen</br> *Highlights:*? This article reviews the developments of in vivo 17O NMR imaging in brain research. ? In vivo 17O NMR imaging has improved significantly at high/ultrahigh field. ? In vivo 17O NMR can noninvasively image brain oxygen metabolism and perfusion. ? In vivo 17O NMR is useful for mapping the functional change in oxygen...
nmrlearner Journal club 0 04-24-2011 03:42 PM
Solid-state (55)Mn NMR spectroscopy of bis(?-oxo)dimanganese(IV) [Mn(2)O(2)(salpn)(2)], a model for the oxygen evolving complex in photosystem II.
Solid-state (55)Mn NMR spectroscopy of bis(?-oxo)dimanganese(IV) , a model for the oxygen evolving complex in photosystem II. Solid-state (55)Mn NMR spectroscopy of bis(?-oxo)dimanganese(IV) , a model for the oxygen evolving complex in photosystem II. J Am Chem Soc. 2010 Dec 1;132(47):16727-9 Authors: Ellis PD, Sears JA, Yang P, Dupuis M, Boron TT, Pecoraro VL, Stich TA, Britt RD, Lipton AS We have examined the antiferromagneticly coupled bis(?-oxo)dimanganese(IV) complex (1) with (55)Mn solid-state NMR at cryogenic temperatures and...
nmrlearner Journal club 0 03-13-2011 04:01 AM
Elevating Oxygen - Chemical & Engineering News
<img alt="" height="1" width="1" /> Elevating Oxygen Chemical & Engineering News Oxygen is the ugly duckling of biomolecular nuclear magnetic resonance. Although it is a key atom in proteins and nucleic acids, its siblings carbon, ... Elevating Oxygen - Chemical & Engineering News More...
nmrlearner Online News 0 01-03-2011 10:48 PM
[NMR900 blog] C&EN News of the Week: Elevating Oxygen
C&EN News of the Week: Elevating Oxygen Two recent NMR papers by Gang Wu (Queen's) and coworkers are highlighted by Chemical & Engineering News in their first issue of 2011. http://pubs.acs.org/cen/news/89/i01/8901notw4.html Both papers deal with 17O NMR in large protein complexes, in solution and in solid state. New research approaches proposed by Gang Wu and his team have a potential to significantly advance the field of protein NMR spectroscopy. Jianfeng Zhu and Gang Wu, "Quadrupole Central Transition 17O NMR Spectroscopy of Biological Macromolecules in Aqueous Solution,"...
nmrlearner News from NMR blogs 0 01-03-2011 10:48 PM
[NMR paper] Mapping oxygen accessibility to ribonuclease a using high-resolution NMR relaxation s
Mapping oxygen accessibility to ribonuclease a using high-resolution NMR relaxation spectroscopy. Related Articles Mapping oxygen accessibility to ribonuclease a using high-resolution NMR relaxation spectroscopy. Biophys J. 2004 Mar;86(3):1713-25 Authors: Teng CL, Bryant RG Paramagnetic contributions to nuclear magnetic spin-lattice relaxation rate constant induced by freely diffusing molecular oxygen measured at hundreds of different protein proton sites provide a direct means for characterizing the exploration of the protein by oxygen. This...
nmrlearner Journal club 0 11-24-2010 09:25 PM
[NMR paper] Oxygen as a paramagnetic probe of membrane protein structure by cysteine mutagenesis
Oxygen as a paramagnetic probe of membrane protein structure by cysteine mutagenesis and (19)F NMR spectroscopy. Related Articles Oxygen as a paramagnetic probe of membrane protein structure by cysteine mutagenesis and (19)F NMR spectroscopy. J Am Chem Soc. 2002 Feb 27;124(8):1778-81 Authors: Luchette PA, Prosser RS, Sanders CR Oxygen solubility increases toward the hydrophobic interior of membranes. Using NMR, this O(2) solubility gradient gives rise to an exquisite range of position-dependent paramagnetic effects at partial pressures of 100...
nmrlearner Journal club 0 11-24-2010 08:49 PM
Oxygen-17 NMR spectroscopy: Basic principles and applications (part II)
Oxygen-17 NMR spectroscopy: Basic principles and applications (part II) Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Corrected Proof, Available online 13 February 2010</br> Ioannis P., Gerothanassis</br> More...
nmrlearner Journal club 0 08-16-2010 03:50 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2017, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:02 PM.


Map