BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Educational web pages
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 09-08-2008, 01:08 PM
Junior Member
 
Join Date: Sep 2008
Posts: 3
Points: 36, Level: 1
Points: 36, Level: 1 Points: 36, Level: 1 Points: 36, Level: 1
Level up: 72%, 14 Points needed
Level up: 72% Level up: 72% Level up: 72%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
NMR Credits: 0
NMR Points: 36
Downloads: 0
Uploads: 0
Default Protein NMR: Assignment Structure Dynamics - Columbia University

Columbia University's lecture on Assignment Structure Dynamics in Protein NMR can be found here:

http://mcdermott.chem.columbia.edu/biophys/NMR5.ppt

And their biophysical chemistry department's website has links to a range of useful resources:

http://mcdermott.chem.columbia.edu/biophys/links.html
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Structure of Parkinson's disease protein identified - Brandeis University
http://nt3.ggpht.com/news/tbn/59yGiTFD_1OvxM/6.jpg Brandeis University <img alt="" height="1" width="1" /> Structure of Parkinson's disease protein identified Brandeis University Pochapsky's lab was responsible for examining the protein using nuclear magnetic resonance, a sort of MRI for molecules. Alpha-synuclein is found in large quantities in the brain. Its association with Parkinson's disease has stirred curiosity since it ... Structure of Parkinson's disease protein identified - Brandeis University
nmrlearner Online News 0 10-21-2011 10:04 PM
Structure, Dynamics, and Kinetics of Weak Protein-Protein Complexes from NMR Spin Relaxation Measurements of Titrated Solutions.
Structure, Dynamics, and Kinetics of Weak Protein-Protein Complexes from NMR Spin Relaxation Measurements of Titrated Solutions. Structure, Dynamics, and Kinetics of Weak Protein-Protein Complexes from NMR Spin Relaxation Measurements of Titrated Solutions. Angew Chem Int Ed Engl. 2011 Mar 18; Authors: Salmon L, Ortega Roldan JL, Lescop E, Licinio A, van Nuland N, Jensen MR, Blackledge M
nmrlearner Journal club 0 03-23-2011 05:41 PM
A novel strategy for NMR resonance assignment and protein structure determination.
A novel strategy for NMR resonance assignment and protein structure determination. A novel strategy for NMR resonance assignment and protein structure determination. J Biomol NMR. 2010 Dec 14; Authors: Lemak A, Gutmanas A, Chitayat S, Karra M, Farès C, Sunnerhagen M, Arrowsmith CH The quality of protein structures determined by nuclear magnetic resonance (NMR) spectroscopy is contingent on the number and quality of experimentally-derived resonance assignments, distance and angular restraints. Two key features of protein NMR data have posed...
nmrlearner Journal club 0 12-17-2010 11:23 AM
[NMR paper] Simultaneous assignment and structure determination of protein backbones by using NMR
Simultaneous assignment and structure determination of protein backbones by using NMR dipolar couplings. Related Articles Simultaneous assignment and structure determination of protein backbones by using NMR dipolar couplings. Angew Chem Int Ed Engl. 2004 Jun 28;43(26):3479-81 Authors: Jung YS, Sharma M, Zweckstetter M
nmrlearner Journal club 0 11-24-2010 09:51 PM
[NMR paper] Protein NMR structure determination with automated NOE assignment using the new softw
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. Related Articles Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol. 2002 May 24;319(1):209-27 Authors: Herrmann T, Güntert P, Wüthrich K Combined automated NOE assignment and structure determination module (CANDID) is a new software for efficient NMR structure determination of proteins by automated...
nmrlearner Journal club 0 11-24-2010 08:49 PM
Faculty Positions, Univ. British Columbia
Faculty Positions, Univ. British Columbia The Michael Smith Laboratories (MSL) and the Centre for High-throughput Biology (CHiBi) at the University of British Columbia are jointly launching a major recruiting initiative and invite applications for six new faculty positions. These full-time tenure-track positions will be filled primarily at the Assistant Professor level but exceptional candidates at a higher rank may be considered. The six new faculty will be located in exceptional research space at the centre of campus within a highly interdisciplinary and collaborative environment...
nmrlearner Job marketplace 0 08-21-2010 05:17 AM
Faculty Positions, Univ. British Columbia
Faculty Positions, Univ. British Columbia The Michael Smith Laboratories (MSL) and the Centre for High-throughput Biology (CHiBi) at the University of British Columbia are jointly launching a major recruiting initiative and invite applications for six new faculty positions. These full-time tenure-track positions will be filled primarily at the Assistant Professor level but exceptional candidates at a higher rank may be considered. The six new faculty will be located in exceptional research space at the centre of campus within a highly interdisciplinary and collaborative environment...
nmrlearner Job marketplace 0 08-21-2010 05:14 AM
Dr. Ann McDermott, Columbia University, New York
Research group of Ann McDermott Below is a description of research projects of Dr. <SPAN class=FacultyName>McDermott from her departmental web page. ************************************************************* Research Summary</SPAN> <P xmlns:xmlns:cms="http://www.ais.columbia.edu/sws/xmlns/cucms#">NMR Structural Studies of Membrane Proteins: Most membrane-bound proteins are structurally uncharacterized at present; solid state NMR methods promise to offer important information for these systems. Recently we discovered that NMR spectra of uniformly labeled solid state proteins are...
nmrlearner NMR research groups 0 03-05-2005 10:50 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:29 PM.


Map