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Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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  #1  
Unread 08-29-2008, 12:09 PM
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Default Duke University's NMR lectures

The Duke University website contains lectures covering a wide range of NMR topics - it would make a great starting point for any newcomers to NMR.

Lecture 1 - Introduction to Protein Structure and NMR
Lecture 2 - Protein and NMR Structural Biology I
Lecture 3 - Protein and NMR Structural Biology II
Lecture 4 - Solution Structures of Native and Denatured Proteins Using RDCs
Lecture 6 - JIGSAW and NMR
Lecture 7 - Computational Protein Design
Lecture 8 - Nonribosomal Code & Protein Design
Lecture 10 - RDCs in NMR Structural Biology
Lecture 11 - Nuclear Vector Replacement
Lecture 12 - Protein Flexibility: Introduction to Inverse Kinematics & Loop Closure Problem
Lecture 15 - Modeling Equilibrium Fluctuations in Proteins
Lecture 16 - Kinetic studies of the initial module PheATE of Gramicidin S Synthetase
Lecture 18 - Generalized Belief Propagation and Free Energy Approximations
Lecture 19 - Carrier Protein Structure and Recognition in Peptide Biosynthesis
Lecture 20 - Protein-Ligand NOE Matching
Lecture 21 - Side-Chain & Backbone Flexibility in Protein Core Design
Lecture 22 - A Topology-Constrained Network Algorithm for NOESY Data Interpretation
Lecture 23 - Mars: Robust Automatic Backbone Assignment and Its Extension
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