View Single Post
  #1  
Unread 08-22-2010, 03:41 AM
nmrlearner's Avatar
nmrlearner nmrlearner is offline
Senior Member
 
Join Date: Jan 2005
Posts: 23,135
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 0
Downloads: 0
Uploads: 0
Default Internal mobility of the basic pancreatic trypsin inhibitor in solution: a comparison

Internal mobility of the basic pancreatic trypsin inhibitor in solution: a comparison of NMR spin relaxation measurements and molecular dynamics simulations.

Related Articles Internal mobility of the basic pancreatic trypsin inhibitor in solution: a comparison of NMR spin relaxation measurements and molecular dynamics simulations.

J Mol Biol. 1995 Feb 17;246(2):356-65

Authors: Smith PE, van Schaik RC, Szyperski T, Wüthrich K, van Gunsteren WF

Order parameters as well as longitudinal and transverse relaxation rates are calculated for the backbone 15N and 13C alpha nuclei of the basic pancreatic trypsin inhibitor (BPTI) from a 1000 ps molecular dynamics trajectory in explicit water at 277 K using the "model free" approach of Lipari and Szabo. New NMR relaxation data at 277 K are presented, and a comparison is made between NMR relaxation measurements and molecular dynamics relaxation data. It is found that the relaxation processes determining the longitudinal (T1) relaxation rates are inadequately sampled even during this length of simulation. In effect, the calculated relaxation rates are determined almost solely by the order parameters and the overall rotational correlation time of the protein, which appears to be in clear contrast to experimental relaxation rates.

PMID: 7532721 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No